View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13490_high_17 (Length: 315)
Name: NF13490_high_17
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 57 - 303
Target Start/End: Original strand, 50897999 - 50898246
Alignment:
| Q |
57 |
tgtgtgcgtatctacctactcaattgtttcctaacaaggcaacaccatattcacaaattcgaacaatatttttcaacagagaataaaggatgtgcttact |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50897999 |
tgtgtgcgtatctacctactcaattgtttcctaacaaggcaacaccatattcacaaattcgaacaatatttttcaacagagaataaaggatgtgcttact |
50898098 |
T |
|
| Q |
157 |
caactaaaaacttgcatgtcagttataaatgcttccaggaacacttgtcaattttaattgataacg-aactactgaataggaaactttgtatacctcttg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50898099 |
caactaaaaacttgcatgtcagttataaatgcttccaggaacacttgtcaattttaattgataacgaaactactgaataggaaactttgtatacctcttg |
50898198 |
T |
|
| Q |
256 |
tgtgtctcggctgttagttacaggcttgaactcattgttctctagtat |
303 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50898199 |
tgtgtctcggctgttggttacaggcttgaactcattgttctctagtat |
50898246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50897870 - 50897927
Alignment:
| Q |
1 |
cttatgcctttaaaaggtatataaaatgaaagaaaatataccaacatttacttcattg |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50897870 |
cttatgcctttaaaaggtatataaaatgaaagaaaatataccaacatttacttcattg |
50897927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 12292536 - 12292476
Alignment:
| Q |
243 |
tgtatacctcttgtgtgtctcggctgttagttacaggcttgaactcattgttctctagtat |
303 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||| |||||| ||||||||| |||||||| |
|
|
| T |
12292536 |
tgtatacctcttgtgtatctctgctattagttactggcttgttctcattgttgtctagtat |
12292476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University