View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13490_high_2 (Length: 645)

Name: NF13490_high_2
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13490_high_2
NF13490_high_2
[»] chr4 (2 HSPs)
chr4 (18-645)||(18152611-18153238)
chr4 (211-636)||(1785691-1786116)
[»] chr6 (1 HSPs)
chr6 (197-645)||(23936901-23937344)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-557)||(222478-223009)
[»] chr7 (5 HSPs)
chr7 (320-578)||(18637829-18638087)
chr7 (411-578)||(18651263-18651430)
chr7 (320-507)||(18604928-18605115)
chr7 (133-168)||(47586031-47586066)
chr7 (541-578)||(18605124-18605161)
[»] chr5 (1 HSPs)
chr5 (320-578)||(38578275-38578533)
[»] chr3 (3 HSPs)
chr3 (476-645)||(28371607-28371776)
chr3 (476-645)||(28379429-28379598)
chr3 (65-138)||(22998200-22998273)
[»] chr8 (1 HSPs)
chr8 (488-567)||(6532280-6532359)


Alignment Details
Target: chr4 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Complemental strand, 18153238 - 18152611
Alignment:
18 atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18153238 atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa 18153139  T
118 gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18153138 gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa 18153039  T
218 atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18153038 atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggttt 18152939  T
318 gggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18152938 gggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgat 18152839  T
418 tattggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttcctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18152838 tattggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttcctt 18152739  T
518 gtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18152738 gtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcg 18152639  T
618 aattggatcagtttctcctgaacaaata 645  Q
    ||||||||||||||||||||||||||||    
18152638 aattggatcagtttctcctgaacaaata 18152611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 211 - 636
Target Start/End: Original strand, 1785691 - 1786116
Alignment:
211 tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1785691 tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg 1785790  T
311 gaggtttgggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaa 410  Q
    |||||||||||||||||||| |||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
1785791 gaggtttgggcgctcgagggattcaatgttgctaatattttacaagagatgttgacttataaatctgatcatattaaagctcgtcaagaagtactcggaa 1785890  T
411 ctacgattattggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatca 510  Q
    ||||||||||| | |||| |||||| ||||  | ||||||| ||  ||||||| ||||| |||||||||||||||||||||| ||| |||||  ||||||    
1785891 ctacgattattagtggaaaaataccaaaactggaggatgcttcatgatctttttgattgttcgttcgagaactacgatctttagctttggaatggaatca 1785990  T
511 tttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaac 610  Q
    ||||||| ||| |||||||||||||||||||||||  || |||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||    
1785991 tttccttatatatgagaaagacttccagattcaaaataatgaagtttaattggacttaatcataagttttattctatgactgatcagtataaacatcaac 1786090  T
611 accttcgaattggatcagtttctcct 636  Q
    ||||||||||||||||| ||| ||||    
1786091 accttcgaattggatcaatttttcct 1786116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 197 - 645
Target Start/End: Complemental strand, 23937344 - 23936901
Alignment:
197 attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaac 296  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
23937344 attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaaggaagggtgaaacaaggaggacaac 23937245  T
297 gggtaggcgaaatggaggtttgggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcata--ttaaagctcgt 394  Q
     ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||  |||    
23937244 tggtaggcaaaatggaggtttgggcgctcgaggggtttggtgttgctcatattttacaagagatgttgacttataaatctgatcatattttaaagtgcgt 23937145  T
395 caagaagtactcggaactacgattattggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttgg 494  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||      
23937144 caagaagtactcagaactacgattattggaggaacaatacctaaacttgtggatgctccagaatctttttgattgctcgttcgagaactacaatcttt-- 23937047  T
495 ctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgat 594  Q
         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23937046 -----gaactgaatcatttccttgtatctgagaaagacttccaaattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgat 23936952  T
595 cagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaata 645  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||| |||||    
23936951 cagtataaagatcaacaccttcgagttggatcaatttctcctgaataaata 23936901  T

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Target: scaffold0002 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 26 - 557
Target Start/End: Original strand, 222478 - 223009
Alignment:
26 gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa 125  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||   ||||||||| |||||||||||||||| |||||||| ||| |||    
222478 gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa 222577  T
126 tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg 225  Q
    |||||||||||||||||||  | |  ||||| || |||||| ||||||| ||| | ||||| || ||||||||||||||||||||||| ||||| |||||    
222578 tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg 222677  T
226 acgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggtttgggcgctc 325  Q
     ||||| | ||| |  ||  |||||||||||||||||||  ||| |||||| || || ||||| |||||||| ||||| |||||||| ||||||||  |     
222678 gcgttctactgggccctactcacttgttacacaacaaccggttagaggaagagccaagcaagggggacaacgagtaggagaaatggaagtttgggcttta 222777  T
326 gaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggag 425  Q
    || || || |||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||||| |||||| ||||     |||||||    |||     
222778 gaaggatttggtgttgctcatattttacaagagatacttacttataaatctgaccatcttatagctcgccaagaaatacttaatgctacgatctggggaa 222877  T
426 gaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctga 525  Q
     || ||||||||| | || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
222878 aaagaatacctaatcatgaggatcctccagaatcttttcgagtgctcgttcgagaactacgatctttggctctagaactgaatcatttccttgtatctga 222977  T
526 gaaagacttccagattcaaaggaaggaagttt 557  Q
     ||  |||||||| || | ||| |||||||||    
222978 aaagaacttccaggttaatagggaggaagttt 223009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 320 - 578
Target Start/End: Complemental strand, 18638087 - 18637829
Alignment:
320 gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta 419  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||    
18638087 gcgcttgaggggttcgatgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatta 18637988  T
420 ttggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgt 519  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||||| || |||||||||  | |||||||||||||||||    
18637987 ttggaggaacaatacataaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttaagctgaatcatttccttgt 18637888  T
520 atctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaatt 578  Q
    || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
18637887 atatgagaaagactttcagattcaaaggaaggaaatttaattggactgaatcagaaatt 18637829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 411 - 578
Target Start/End: Complemental strand, 18651430 - 18651263
Alignment:
411 ctacgattattggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatca 510  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||||| || |||||||||  | ||||||||    
18651430 ctacgattattggaggaacaatacataaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttaagctgaatca 18651331  T
511 tttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaatt 578  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
18651330 tttccttgtatatgagaaagactttcagattcaaaggaaggaaatttaattggactgaatcagaaatt 18651263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 320 - 507
Target Start/End: Original strand, 18604928 - 18605115
Alignment:
320 gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta 419  Q
    ||||| |||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||| |    
18604928 gcgcttgaggggttcgatgttgcttttattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatca 18605027  T
420 ttggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaa 507  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||||| || | ||||||| || |||||    
18605028 ttggaggaacaatacataaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatatggctcttgagctgaa 18605115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
133 tggaagaacagggaatctttttgaacagcctgttat 168  Q
    ||||||||||||||||||||||||||||||||||||    
47586031 tggaagaacagggaatctttttgaacagcctgttat 47586066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 18605124 - 18605161
Alignment:
541 tcaaaggaaggaagtttaattggactgaatcagaaatt 578  Q
    ||||||||||||| |||||||||||||||||| |||||    
18605124 tcaaaggaaggaaatttaattggactgaatcataaatt 18605161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 320 - 578
Target Start/End: Original strand, 38578275 - 38578533
Alignment:
320 gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta 419  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||    
38578275 gcgcttgaggggttcgatgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatta 38578374  T
420 ttggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgt 519  Q
    || |||||||||||| | ||| ||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| ||  ||||||||||||||||    
38578375 ttagaggaacaatacatcaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttgaggtgaatcatttccttgt 38578474  T
520 atctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaatt 578  Q
    || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
38578475 atatgagaaagactttcagattcaaaggaatgaagtttaattgtactgaatcagaaatt 38578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 7e-91; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 476 - 645
Target Start/End: Original strand, 28371607 - 28371776
Alignment:
476 cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28371607 cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa 28371706  T
576 attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaata 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28371707 attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaata 28371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 476 - 645
Target Start/End: Original strand, 28379429 - 28379598
Alignment:
476 cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28379429 cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa 28379528  T
576 attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaata 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28379529 attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaata 28379598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
65 gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag 138  Q
    |||| |||| ||||||| |||||||| |||||| | ||  ||||||||||||| |||| ||||||| |||||||    
22998273 gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag 22998200  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 567
Target Start/End: Complemental strand, 6532359 - 6532280
Alignment:
488 tctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactg 567  Q
    ||||||||||| |||| ||||  ||||||| |||||||| |||| |||||||||||||| ||   |||||| ||||||||    
6532359 tctttggctcttgaacggaattgtttccttatatctgaggaagatttccagattcaaagaaaatgagtttatttggactg 6532280  T

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