View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13490_high_3 (Length: 637)

Name: NF13490_high_3
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13490_high_3
NF13490_high_3
[»] chr4 (6 HSPs)
chr4 (17-550)||(18343150-18343685)
chr4 (558-637)||(18343719-18343798)
chr4 (390-485)||(50593601-50593696)
chr4 (60-106)||(22101579-22101625)
chr4 (472-513)||(506514-506555)
chr4 (472-513)||(18042075-18042116)
[»] scaffold0002 (4 HSPs)
scaffold0002 (18-550)||(163684-164218)
scaffold0002 (57-460)||(277909-278312)
scaffold0002 (593-637)||(163545-163589)
scaffold0002 (558-593)||(163610-163645)
[»] scaffold0702 (1 HSPs)
scaffold0702 (131-460)||(6873-7202)
[»] chr8 (1 HSPs)
chr8 (131-460)||(35194958-35195287)
[»] scaffold1779 (1 HSPs)
scaffold1779 (51-500)||(75-524)
[»] chr2 (1 HSPs)
chr2 (17-234)||(36840925-36841142)
[»] chr3 (3 HSPs)
chr3 (17-222)||(18374946-18375148)
chr3 (432-531)||(54630176-54630277)
chr3 (472-513)||(17223707-17223748)
[»] chr5 (2 HSPs)
chr5 (135-263)||(10258309-10258437)
chr5 (472-510)||(19153780-19153818)
[»] chr6 (3 HSPs)
chr6 (558-607)||(31058724-31058773)
chr6 (472-513)||(14543011-14543052)
chr6 (514-550)||(31058812-31058848)
[»] chr7 (2 HSPs)
chr7 (18-154)||(46634322-46634463)
chr7 (472-513)||(6930446-6930487)
[»] scaffold0330 (2 HSPs)
scaffold0330 (593-637)||(13433-13477)
scaffold0330 (558-593)||(13377-13412)
[»] chr1 (1 HSPs)
chr1 (269-345)||(5478421-5478497)
[»] scaffold0008 (1 HSPs)
scaffold0008 (472-513)||(265168-265209)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 18343150 - 18343685
Alignment:
Q  17 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343150 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 18343249  T
Q  117 tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343250 tattttctgggacccctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc 18343349  T
Q  217 ggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatt 316  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343350 ggtaggtcttactgtaacaggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatt 18343449  T
Q  317 tgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343450 tgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgat 18343549  T
Q  417 gttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagatgtccacctcata--g 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  |    
T  18343550 gttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacgg 18343649  T
Q  515 ctcctcacgaataaatcgattcaaaaatatttaacc 550  Q
    |||||| |||||||||||||||||||||||||||||    
T  18343650 ctcctcgcgaataaatcgattcaaaaatatttaacc 18343685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 558 - 637
Target Start/End: Original strand, 18343719 - 18343798
Alignment:
Q  558 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatgg 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343719 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatgg 18343798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 485
Target Start/End: Complemental strand, 50593696 - 50593601
Alignment:
Q  390 aggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattaca 485  Q
    ||||||||| ||| ||| ||||| |||||||||||  | |||||||||||| ||||||||||||  ||||| ||| ||||||| ||||||||||||    
T  50593696 aggcttttcttttaatttttccttgatgttgtttattggatctggttctttgggggttatagttagtggttgtttatcaattctatctctattaca 50593601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 22101579 - 22101625
Alignment:
Q  60 tgaattgagttcgtataggcattttggatgccgctattgaaatagcc 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  22101579 tgaattgagttcgtatagacattttggatgccgctattgaaatagcc 22101625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 506555 - 506514
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctcata 513  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  506555 ccatctctattacagaaccgtacatgagattttcacctcata 506514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 513
Target Start/End: Original strand, 18042075 - 18042116
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctcata 513  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  18042075 ccatctctattacagaaccgtacatgagattttcacctcata 18042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 164218 - 163684
Alignment:
Q  18 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctat 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  164218 atactaaagacctatttcgatctaatgattattctgaaagaatgaattgagttcttataggcattttggatgccgctattgaaatagcctttctagctat 164119  T
Q  118 attttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcg 217  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164118 attttctgggaccccgcccatttcataaagtattttgtcgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcg 164019  T
Q  218 gtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctattt 317  Q
    |||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  164018 gtagatcttaatgtaacaggtttgtctggaaatatgcatacccatattttcccacctcggcgaacatttcgtgacattgcccatcgccctacttctattt 163919  T
Q  318 gtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatg 417  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163918 gtctagatgtgatccaagcgggctcaagtgcctaaagaacatatttttcgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatg 163819  T
Q  418 ttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagatgtccacctcata--gc 515  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||  ||    
T  163818 ttgtttgcggaatctggttcttttggggttatagttgatagttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggc 163719  T
Q  516 tcctcacgaataaatcgattcaaaaatatttaacc 550  Q
    ||||| |||||||||||||||||||||||||||||    
T  163718 tcctcgcgaataaatcgattcaaaaatatttaacc 163684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 57 - 460
Target Start/End: Original strand, 277909 - 278312
Alignment:
Q  57 gaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtattttgcc 156  Q
    |||| |||||| ||||||| ||||||||    |||||||| || |||||   |||||||| | |||| |  || || |||||||||||||||||    ||    
T  277909 gaataaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtatacgacc 278008  T
Q  157 gggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgt 256  Q
     |||||||| || ||||||||||||||||| || || |||||||| |||||||| ||||| || ||||||| |||||| |||||||| |||||||| |||    
T  278009 tggtttaacaacggctacccaatattcgggggacccctttcccgagcccatacgtgtttccgtgggtcttagtgtaaccggtttgtcgggaaatatacgt 278108  T
Q  257 acccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagag 356  Q
    ||||||||||| ||||| || ||  ||| |||||  ||||| | ||| ||||||||||| ||||| |  |||||||||||||| |||||||| |||||||    
T  278109 acccatatttttccaccacgacgtgcatatcgtgttattgctcttcgtcctgcttctatctgtctcgccgtgatccaagcgggttcaagtgcttgaagag 278208  T
Q  357 catattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgat 456  Q
    ||||| | || ||  ||||   ||| |||||  ||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||    
T  278209 catatctaccaaaacaaatacgattgcctcggaaggattttcctttcattcttcctctatgttgtttgcgaaatctggttcttttggggttatagtcgat 278308  T
Q  457 ggtt 460  Q
    ||||    
T  278309 ggtt 278312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 637
Target Start/End: Complemental strand, 163589 - 163545
Alignment:
Q  593 tattagaaatttgtatatcttgctttgatatagaaccaaatatgg 637  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||    
T  163589 tattagaaatttgtatatcttgcttggatataaaaccaaatatgg 163545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 593
Target Start/End: Complemental strand, 163645 - 163610
Alignment:
Q  558 tttaaaatagaatacaatcgcgggattttttgacat 593  Q
    |||||||||||||| |||||||||||||||||||||    
T  163645 tttaaaatagaatagaatcgcgggattttttgacat 163610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 131 - 460
Target Start/End: Complemental strand, 7202 - 6873
Alignment:
Q  131 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  7202 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagattcttttcctgaacccatacgcgtttcggtaggtattactg 7103  T
Q  231 taacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgat 330  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  7102 taacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtgatattgcccgtcgccttgcttctatttgtctagatgtgat 7003  T
Q  331 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaat 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7002 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacgaaat 6903  T
Q  431 ctggttcttttggggttatagttgatggtt 460  Q
    ||||||||||||||||||||||||||||||    
T  6902 ctggttcttttggggttatagttgatggtt 6873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 131 - 460
Target Start/End: Complemental strand, 35195287 - 35194958
Alignment:
Q  131 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  35195287 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagattcttttcctgaacccatacgcgtttcggtaggtattactg 35195188  T
Q  231 taacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgat 330  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  35195187 taacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtgatattgcccgtcgccttgcttctatttgtctagatgtgat 35195088  T
Q  331 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaat 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35195087 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacgaaat 35194988  T
Q  431 ctggttcttttggggttatagttgatggtt 460  Q
    ||||||||||||||||||||||||||||||    
T  35194987 ctggttcttttggggttatagttgatggtt 35194958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 230; Significance: 1e-126; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 51 - 500
Target Start/End: Complemental strand, 524 - 75
Alignment:
Q  51 ctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtat 150  Q
    |||||| ||||||||| |||  |||||||||||| || ||||||||||||||||||||||| ||||||||||| |  || || | |||||||||||||||    
T  524 ctgaaataatgaattgcgtttttataggcatttttgacgccgctattgaaatagcctttctggctatattttcggctactccactcatttcataaagtat 425  T
Q  151 tttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaat 250  Q
    | |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||    
T  424 tctgcccggtttaacgacagctacccaatactcgggagatcctttccccgaacccatacgtgtttctgtaggtcttaccgtaactggtttgtctggaaat 325  T
Q  251 atgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcct 350  Q
    || |||||||||| ||| ||||| ||||| |||||||||| |||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||| |    
T  324 atacgtacccatagttttccaccacggcgtacatttcgtgtcattgcgcggcgccccgcttctatttgtctagatgtaatccaagcgggttcaagtgctt 225  T
Q  351 gaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttata 450  Q
    ||||||||||| | |||||  ||||   |||||||||||| | | | || ||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  224 gaagagcatatctaccgaaacaaatccgattacctcgataagatatccccttcattcttcctctatgttgtttacgaaatcgggttcttttggggttata 125  T
Q  451 gttgatggttatttctcaattccatctctattacagaaccgtacatgaga 500  Q
    ||||||| || ||| | ||||||||||||| |||||||| | ||||||||    
T  124 gttgatgtttgtttatgaattccatctctactacagaactggacatgaga 75  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 36840925 - 36841142
Alignment:
Q  17 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840925 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 36841024  T
Q  117 tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36841025 tattttctgggacccctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc 36841124  T
Q  217 ggtaggtcttactgtaac 234  Q
    ||||||||||||||||||    
T  36841125 ggtaggtcttactgtaac 36841142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 18375148 - 18374946
Alignment:
Q  17 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 116  Q
    |||| |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18375148 catattaaagatctatttcgttctaatagttattctcaaagaataaattgagttcgtataggcattttggatgccgctattgaaatattctttctagcta 18375049  T
Q  117 tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc 216  Q
    |||||| |||||  || ||||||||||||||||||| | | |||||||| ||| |||  ||||| || | |||| |||||| ||||||||||| ||||||    
T  18375048 tattttttggga--ccccccatttcataaagtatttagtcaggtttaacaacaactattcaata-tcagaagattcttttctcgaacccatactcgtttc 18374952  T
Q  217 ggtagg 222  Q
    ||||||    
T  18374951 ggtagg 18374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 432 - 531
Target Start/End: Original strand, 54630176 - 54630277
Alignment:
Q  432 tggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagatgtccacctcat--agctcctcacgaataaa 529  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||||||| | |||| |||  |||||||||||||||||    
T  54630176 tggttcttttggtgttatagttgatagttatttctcaattccatctctattacaaaatcgtacatgagattttcaccccatacagctcctcacgaataaa 54630275  T
Q  530 tc 531  Q
    ||    
T  54630276 tc 54630277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 513
Target Start/End: Original strand, 17223707 - 17223748
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctcata 513  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  17223707 ccatctctattacagaaccgtacatgagattttcacctcata 17223748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 10258437 - 10258309
Alignment:
Q  135 ccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac 234  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| ||||    
T  10258437 ccatttcataaagtattttaccggatttaatgacagctacccaatattcgggagatccgtttcccaaacccatacacgtttcagtaggtcttactctaac 10258338  T
Q  235 gggtttgtctggaaatatgcgtacccata 263  Q
      |||||||||||| ||||| ||||||||    
T  10258337 aagtttgtctggaattatgcatacccata 10258309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 19153780 - 19153818
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctc 510  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  19153780 ccatctctattacagaaccgtacatgagattttcacctc 19153818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 607
Target Start/End: Complemental strand, 31058773 - 31058724
Alignment:
Q  558 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058773 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta 31058724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 14543052 - 14543011
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctcata 513  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  14543052 ccatctctattacagaaccgtacatgagattttcacctcata 14543011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 31058848 - 31058812
Alignment:
Q  514 gctcctcacgaataaatcgattcaaaaatatttaacc 550  Q
    ||||||| |||||||||||||||||||||||||||||    
T  31058848 gctcctcgcgaataaatcgattcaaaaatatttaacc 31058812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 46634322 - 46634463
Alignment:
Q  18 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggat-----gccgctattgaaatagcctttcta 112  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||| |||  ||| |||||||||| ||||||     || |||||||||||||| ||||||    
T  46634322 atactaaagacatatttggttctaattattcttctgaaagaatg-attaggtttgtataggcatcttggatgtcgcgctgctattgaaatagcttttcta 46634420  T
Q  113 gctata-ttttctgggacgcctcccatttcataaagtattttg 154  Q
    |||||| |||| ||| |  |||||||||||||||| |||||||    
T  46634421 gctatatttttttggaatccctcccatttcataaaatattttg 46634463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 6930487 - 6930446
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctcata 513  Q
    ||||||||| |||||||||||||||||||| | |||||||||    
T  6930487 ccatctctaatacagaaccgtacatgagattttcacctcata 6930446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 593 - 637
Target Start/End: Original strand, 13433 - 13477
Alignment:
Q  593 tattagaaatttgtatatcttgctttgatatagaaccaaatatgg 637  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  13433 tattagaaatttgtatattttgctttgatatagaaccaaatatgg 13477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 593
Target Start/End: Original strand, 13377 - 13412
Alignment:
Q  558 tttaaaatagaatacaatcgcgggattttttgacat 593  Q
    |||||||||||||||||||||| |||||||||||||    
T  13377 tttaaaatagaatacaatcgcgagattttttgacat 13412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 5478421 - 5478497
Alignment:
Q  269 ccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaag 345  Q
    |||||||| ||||||||||||||||||  ||||| ||    ||||||||||||||||||||||||||| ||||||||    
T  5478421 ccacctcgacgaacatttcgtgacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaag 5478497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 513
Target Start/End: Original strand, 265168 - 265209
Alignment:
Q  472 ccatctctattacagaaccgtacatgagatgtccacctcata 513  Q
    ||||||||||||||||||||||||| |||| | |||||||||    
T  265168 ccatctctattacagaaccgtacataagattttcacctcata 265209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University