View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13490_high_4 (Length: 549)
Name: NF13490_high_4
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 15 - 549
Target Start/End: Original strand, 18143967 - 18144502
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18143967 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
18144066 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144067 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
18144166 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144167 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
18144266 |
T |
|
| Q |
315 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattgccctgccctct--nnnnnnnnta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18144267 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattgccctgccctctaaaaaaaatata |
18144366 |
T |
|
| Q |
413 |
tatatataacttgaaagggaattattttgattcaaccatttccttatttgaatttgactttcattgccttttctattttgaatacctactaatcacaaaa |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| || || || ||||||||||||||||||||||||||| |
|
|
| T |
18144367 |
tatatataacttgaaagggaattattttgattcaaccatttccttatttgactttca-tttccttttctattttattttgaatacctactaatcacaaaa |
18144465 |
T |
|
| Q |
513 |
tatttatttttgcacaattttgtaatgctataataac |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144466 |
tatttatttttgcacaattttgtaatgctataataac |
18144502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 48185283 - 48185628
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48185283 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccg |
48185382 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
48185383 |
cagaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcgga |
48185482 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185483 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagacgtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
48185582 |
T |
|
| Q |
315 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185583 |
agaaatgttgacctacttcgacagcagatatatcatagattaatgt |
48185628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 356 - 549
Target Start/End: Original strand, 48189553 - 48189747
Alignment:
| Q |
356 |
aatgtgttgatgtaacataatagaacattcatattgccctgccctctnnnnnnnnt-------atatatataacttgaaagggaattattttgattcaac |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48189553 |
aatgtgttgatgtaacataatagaacattcatattgccctgccctctaaaaaatattatatatatatatataacttgaaagggaattattttaattcaac |
48189652 |
T |
|
| Q |
449 |
catttccttatttgaatttgactttcattgccttttctattttgaatacctactaatcacaaaatatttatttttgcacaattttgtaatgctataataa |
548 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48189653 |
catttccttattt------gactttcatttccttttctattttgaatacctactaatcacaaaataattatttttgcacaattttgtaatgctataataa |
48189746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
169 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 9293777 - 9294013
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293777 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
9293876 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293877 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
9293976 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293977 |
tttctaacaactagaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 269 - 549
Target Start/End: Original strand, 9292295 - 9292574
Alignment:
| Q |
269 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9292295 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacaacagatatatcatagattaatgtgttgatgt |
9292394 |
T |
|
| Q |
369 |
aacataatagaacattcatattgccctgccctctnnnnnnnntatatatataacttgaaagggaattattttgattcaaccatttccttatttgaatttg |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9292395 |
aacataatagaacattcatattgccctgccctctaaaaaatatatatatataacttgaaagggaattattttgattcaaccatttccttatttgactttc |
9292494 |
T |
|
| Q |
469 |
actttcattgccttttctattttgaatacctactaatcacaaaatatttatttttgcacaattttgtaatgctataataac |
549 |
Q |
| |
|
| |||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9292495 |
a-tttccttttctattttattttgaatacctactaatcacaaaatatttatttttgcacaattttgtaatgctataataac |
9292574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 29215905 - 29215965
Alignment:
| Q |
470 |
ctttcattgccttttctattttgaatacctactaatcacaaaatatttatttttgcacaat |
530 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29215905 |
ctttcatttccttttctattttgaatacctactaatcacaaaatatttatttttgcacaat |
29215965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 24489234 - 24489470
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489234 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
24489333 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489334 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
24489433 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489434 |
tttctaacaactagaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 231420 - 231087
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaaccca |
114 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
231420 |
attccccatggggtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaaccca |
231321 |
T |
|
| Q |
115 |
cggaccatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcgga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| ||| || || || ||||| ||| |
|
|
| T |
231320 |
gggaccatattcttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctgcccgtcggtcgggatggtttgtgga |
231221 |
T |
|
| Q |
215 |
tttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaat |
314 |
Q |
| |
|
|| | |||| ||| | |||| || ||||||| |||||| |||||||| || || ||||| || ||||| | ||||||| | ||||||||||||| |
|
|
| T |
231220 |
ttccgaacagctatgacaactgaacctagcaagatagtaattacgacccaagaagtgatgagtacctgggcatgaatttgaaaacctcctatttgccaat |
231121 |
T |
|
| Q |
315 |
agaaatgttgacctacttcgacagcagatatatc |
348 |
Q |
| |
|
|||| ||||| |||||||| ||| | |||||||| |
|
|
| T |
231120 |
agaagtgttggcctacttctacacccgatatatc |
231087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 185 - 353
Target Start/End: Original strand, 34676485 - 34676652
Alignment:
| Q |
185 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgag |
284 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataagcacttgag |
34676583 |
T |
|
| Q |
285 |
catgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcataga |
353 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
34676584 |
tatgcacttaaaactcacctatttgccaatgaaaatgtttccctacttccacaacagatatatcataga |
34676652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 22966007 - 22965856
Alignment:
| Q |
27 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
126 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||| |
|
|
| T |
22966007 |
gtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattc |
22965909 |
T |
|
| Q |
127 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
179 |
Q |
| |
|
||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965908 |
ttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 25372 - 25503
Alignment:
| Q |
15 |
attctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25372 |
attctccatgaggtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaata |
25471 |
T |
|
| Q |
104 |
aacggaacccacggaccatattcttctccaat |
135 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
25472 |
aacggaacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 8868187 - 8868319
Alignment:
| Q |
10 |
agattattctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacgga |
109 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||| |
|
|
| T |
8868187 |
agataattctccatgagataactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatgga |
8868284 |
T |
|
| Q |
110 |
acccacggaccatattcttctccaatctgagtttt |
144 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8868285 |
acccactgaccatattcttctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
104 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
151 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
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