View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13490_high_5 (Length: 466)
Name: NF13490_high_5
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_5 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 18342984 - 18342536
Alignment:
| Q |
18 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342984 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
18342885 |
T |
|
| Q |
118 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18342884 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
18342785 |
T |
|
| Q |
218 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagcacccgaggtattataata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342784 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagcacccgaggtattataata |
18342685 |
T |
|
| Q |
318 |
cgagatcgtgatatagatatattatttaggactggaatgaataggaaggaaatctatttgaatatatatttgaatagaagtgaaatagagtcctaaatat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342684 |
cgagatcgtgatatagatatattatttaggactggaatgaataggaaggaaatctatttgaatatatatttgaatagaagtgaaatagagtcctaaatat |
18342585 |
T |
|
| Q |
418 |
attagatctcacatatatactttatatacttgtgtaatcattattctat |
466 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18342584 |
attagatctcacatatataccttatatacttgtgtaatcattattctat |
18342536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 79 - 336
Target Start/End: Complemental strand, 48288862 - 48288606
Alignment:
| Q |
79 |
aaagcagtaccaaattcatctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataa |
178 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||| | |||| ||| ||||||||||||||||||| || ||| ||||||||||| |
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|
| T |
48288862 |
aaaggagtatcaaattcatctttagaaagatctgaagtgattaggagtc-aattatac----ttgtaaagaactaaaacgtggtgatgatataataataa |
48288768 |
T |
|
| Q |
179 |
agtatgatgataatgcggcggttctcattgataaagaaggaaatccaaaaggaactcga----attttttccgcaatagcccgagaattgagacagttaa |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||| |
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|
| T |
48288767 |
agtatgatgataatgcggcggttctcattgataaagaaggaaattcaaaaggaactcgatttttttttttttgcaatagcccgagaattgagacaggtaa |
48288668 |
T |
|
| Q |
275 |
atttcactaaaatagtttcattagcacccgaggtattataatacgagatcgtgatatagata |
336 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||| |
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|
| T |
48288667 |
atttcacttaaatagtttcattaacatccgaggtattataatacgagatggtgatatagata |
48288606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 36840757 - 36840497
Alignment:
| Q |
18 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840757 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
36840658 |
T |
|
| Q |
118 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840657 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
36840558 |
T |
|
| Q |
218 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaattt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840557 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaattt |
36840497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 164380 - 164630
Alignment:
| Q |
18 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
164380 |
cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg |
164479 |
T |
|
| Q |
118 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
217 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
164480 |
atcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataatgaag |
164579 |
T |
|
| Q |
218 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagac |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
164580 |
gaaatccaaaaggaactagaattttttccgcaatagcccgagaattgagac |
164630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 315
Target Start/End: Complemental strand, 277629 - 277415
Alignment:
| Q |
101 |
tagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggt |
200 |
Q |
| |
|
|||||||||| ||||| || | ||||||||||||||||| ||||||||| | ||| | | ||||||||||| |||||||| ||||| ||||| |
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|
| T |
277629 |
tagaaagatccgaagtaattcgagctgtaattgtacgtacatgtaaagaattcaaatgcgaagacggtataataatccgctatgatgacaatgctgcggt |
277530 |
T |
|
| Q |
201 |
tctcattgataaagaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagca |
300 |
Q |
| |
|
| | |||||| || |||| || ||||||||||||||| ||||| ||| || ||| ||||||||| | || ||||| || ||||||||||||||||| |
|
|
| T |
277529 |
tataattgatcaaaaaggcaacccaaaaggaactcgagtttttggcgcgattgccgaggaattgagagaattgaattttaccaaaatagtttcattagct |
277430 |
T |
|
| Q |
301 |
cccgaggtattataa |
315 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
277429 |
cctgaagtattataa |
277415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 14249346 - 14249096
Alignment:
| Q |
18 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
14249346 |
cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg |
14249247 |
T |
|
| Q |
118 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
217 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
14249246 |
atcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataatgaag |
14249147 |
T |
|
| Q |
218 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagac |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14249146 |
gaaatccaaaaggaactagaattttttccgcaatagcccgagaattgagac |
14249096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 733 - 1037
Alignment:
| Q |
18 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
117 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||| || |||||||||| ||||| |||||||||||||| || || |||||||||| |||||| |
|
|
| T |
733 |
cataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagtg |
832 |
T |
|
| Q |
118 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| || || || |||||| |||||||| ||||| || ||| |||||||| |||||| |
|
|
| T |
833 |
atcagagctgtaattgtacgtacttgtaaagaactcaaacgcgacaacgggatgataatacgatatgatgacaatgctgccgttgtcattgatcaagaag |
932 |
T |
|
| Q |
218 |
gaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagcacccgaggtattataata |
317 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
933 |
gaaatccaaaaggaactcgaatttttggtgcgatcgcccgggaattgagacagttaaatttcactaaaatagtttcattagctcccgaggtattataaga |
1032 |
T |
|
| Q |
318 |
cgaga |
322 |
Q |
| |
|
||||| |
|
|
| T |
1033 |
cgaga |
1037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 46699234 - 46699127
Alignment:
| Q |
18 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699234 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
46699135 |
T |
|
| Q |
118 |
atcagggc |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
46699134 |
atcagggc |
46699127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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