View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_6 (Length: 388)
Name: NF13490_high_6
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_6 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 10068 - 9691
Alignment:
| Q |
10 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
10068 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaattt |
9970 |
T |
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| Q |
110 |
gttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
209 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9969 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
9870 |
T |
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| Q |
210 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
309 |
Q |
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| T |
9869 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
9770 |
T |
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| Q |
310 |
cagtgctacgccttcaaccactcggccatctctcctacataatgattatgtccctcgagtgaatagtgaggcatagata |
388 |
Q |
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| T |
9769 |
cagtgctacgccttcaaccactcggccatctctcctacataatgattatgtccctcgagtgaatagtgaggcatagata |
9691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 18181063 - 18180686
Alignment:
| Q |
10 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
18181063 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaattt |
18180965 |
T |
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| Q |
110 |
gttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
209 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180964 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
18180865 |
T |
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| Q |
210 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
309 |
Q |
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| T |
18180864 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
18180765 |
T |
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| Q |
310 |
cagtgctacgccttcaaccactcggccatctctcctacataatgattatgtccctcgagtgaatagtgaggcatagata |
388 |
Q |
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| T |
18180764 |
cagtgctacgccttcaaccactcggccatctctcctacataatgattatgtccctcgagtgaatagtgaggcatagata |
18180686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 113 - 388
Target Start/End: Complemental strand, 37189616 - 37189344
Alignment:
| Q |
113 |
attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
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| Q |
213 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag |
312 |
Q |
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| T |
37189516 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag |
37189420 |
T |
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| Q |
313 |
tgctacgccttcaaccactcggccatctctcctacataatgattatgtccctcgagtgaatagtgaggcatagata |
388 |
Q |
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| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37189419 |
tactgcaccttcaaccactcggccatctctcctacataatgattatgtccctcgagtgaatagtgaggcattgata |
37189344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
| Q |
257 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
244912 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa |
244818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 207782 - 207817
Alignment:
| Q |
250 |
aagggtgcggaaagagagggattcgaaccctcggta |
285 |
Q |
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| T |
207782 |
aagggagcggaaagagagggattcgaaccctcggta |
207817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 27029783 - 27029882
Alignment:
| Q |
269 |
gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtccct |
364 |
Q |
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||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27029783 |
gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgattatgcccct |
27029882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 42790 - 42818
Alignment:
| Q |
257 |
cggaaagagagggattcgaaccctcggta |
285 |
Q |
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| T |
42790 |
cggaaagagagggattcgaaccctcggta |
42818 |
T |
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