View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13490_high_7 (Length: 387)
Name: NF13490_high_7
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_7 |
 | |
|
| [»] chr3 (32 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0958 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 8568988 - 8569377
Alignment:
| Q |
1 |
attggggaatctcttgcaaagaaaatcttctcaaggtgaatggtctaacatattggagactgata-gtggaga--agcaaagggtgacaatgaaattaac |
97 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | | ||||||||| ||||||||||| |
|
|
| T |
8568988 |
attggggaatctcttgcaaagaaaattttctcaaggtgaatggtctaacatattggagactgatatgtggcatttatcgaagggtgacgatgaaattaac |
8569087 |
T |
|
| Q |
98 |
ccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8569088 |
ccagtattgagattgagttaccataatctcccttccaatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatg |
8569187 |
T |
|
| Q |
198 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8569188 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtc |
8569287 |
T |
|
| Q |
298 |
catttcgtttttccaacaatcgataaatccactgtatagtcgtaccatactggtaatgcatgatcttgttaatgatttggcaaaatcaga |
387 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8569288 |
catttcatttttccagcaatcgataaatccactgtatagtcgtaccatactggtaatgcatgatcttgttaatgatttggcaaaatcaga |
8569377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 7587861 - 7587543
Alignment:
| Q |
1 |
attggggaatctcttgcaaagaaaatcttctcaaggtgaatggtctaacatattggagactgata-gtgga--gaagcaaagggtgacaatgaaattaac |
97 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||||| |||||||| ||| ||||||||||| |||| |||| | | | ||||||| ||||||||||| |
|
|
| T |
7587861 |
attggggaaactcctgcaaagaaaattttctcaagctgaatggtttaagatattggagacagatatgtggcatgtatcgaagggtggtgatgaaattaac |
7587762 |
T |
|
| Q |
98 |
ccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
7587761 |
tcagtattgagattgagttaccataatctcccatccaatctaaagcgttgttttgccttttgttcaatatttcccaagggttatgtatttgaaaaagatg |
7587662 |
T |
|
| Q |
198 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |||||||||| ||||| |||||||| ||||| |
|
|
| T |
7587661 |
aattgatcaagctttggatggcagaaggtttgctgaaatgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttggatgatctagagtc |
7587562 |
T |
|
| Q |
298 |
catttcgtttttccaacaa |
316 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
7587561 |
catttcattttttcaacaa |
7587543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 6947163 - 6946940
Alignment:
| Q |
90 |
aaattaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttga |
189 |
Q |
| |
|
||||||| ||||| |||||||||||||||| ||||| |||||| ||| |||||||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
6947163 |
aaattaatccagtgctgagattgagttaccacaatcttccttccaatcggaagcgttgttttgcctattgctccatttttcccaagggttatacatttga |
6947064 |
T |
|
| Q |
190 |
aaaagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| | ||| |||| |
|
|
| T |
6947063 |
aaaagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcagaagagacaaaagtgaagaagagttaggtaatgaaattttcagtgat |
6946964 |
T |
|
| Q |
290 |
ctggagtccatttcgtttttccaa |
313 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
6946963 |
cttgagtcaatttcgtttttccaa |
6946940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 92 - 319
Target Start/End: Original strand, 6520299 - 6520526
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
6520299 |
attaactcagtattgagattgagttaccataatctcccttccaatctaaagcgttgttttgcatattgttctatttttcccaagggttataaatttaaaa |
6520398 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| | |||||||| | |||| |||||| |
|
|
| T |
6520399 |
aagataaattgatcaagctttggatggcagaaggtttgttgaagtgttacggattggacaaaagtgaagaagattttggtaatgaaattttcggtgatct |
6520498 |
T |
|
| Q |
292 |
ggagtccatttcgtttttccaacaatcg |
319 |
Q |
| |
|
||||| ||||| ||||||||| ||||| |
|
|
| T |
6520499 |
tgagtcaatttcatttttccaaaaatcg |
6520526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 90 - 318
Target Start/End: Original strand, 6480117 - 6480345
Alignment:
| Q |
90 |
aaattaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttga |
189 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||| ||||| |||||||||||| |||||| |
|
|
| T |
6480117 |
aaattaatccagtgctgagattgagttaccacaatctcccttccgatcaaaagcgttgctttgccttctgttccattttccccaagggttatacatttga |
6480216 |
T |
|
| Q |
190 |
aaaagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| | |||||||| | |||| |||| |
|
|
| T |
6480217 |
aaaagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcggatcatacaaaagtgaagaagagtttggtaatgaaattttcggtgat |
6480316 |
T |
|
| Q |
290 |
ctggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
|| ||||| ||||| |||||||||||||| |
|
|
| T |
6480317 |
cttgagtcaatttcatttttccaacaatc |
6480345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 103 - 318
Target Start/End: Complemental strand, 8471445 - 8471230
Alignment:
| Q |
103 |
attgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattg |
202 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||| ||||||||||| || || || ||||| ||||||| ||| ||||| | ||||||||| |
|
|
| T |
8471445 |
attgagattgagttaccataacctcccttctaatctgaagcgctgttttgcctactgctctatatttcctaagggttttgagtttgacagggatgaattg |
8471346 |
T |
|
| Q |
203 |
atcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccattt |
302 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| |||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
8471345 |
atcaagctttggatggcagaaggtttgctgaaatgttgcagaagagacaaaagtgaggaagagttgggtaatgaattctttgatgatcttgagtccattt |
8471246 |
T |
|
| Q |
303 |
cgtttttccaacaatc |
318 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
8471245 |
catttctccaacaatc |
8471230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 92 - 318
Target Start/End: Complemental strand, 6735882 - 6735656
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||||||| |||| ||| |
|
|
| T |
6735882 |
attaactcagtactaagattgagttaccataatctcccatcagatctaaagcgttgctttgcctattgttccattttccccaagggttatagatttaaaa |
6735783 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| | || ||||| | |||| |||||| |
|
|
| T |
6735782 |
aagaagtattgatcaagctttggatggcagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggcaatgaaattttcggtgatct |
6735683 |
T |
|
| Q |
292 |
ggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
6735682 |
tgagtcaatttcatttttccaacaatc |
6735656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 6554575 - 6554795
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| |||||||| ||| |||||||| |
|
|
| T |
6554575 |
attaactcagtactaagattgagttaccataatctcccttcggatctaaagcgttgctttgcgtattgttccattttccccaagggctatagatttgaaa |
6554674 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| | |||||||| | |||| |||||| |
|
|
| T |
6554675 |
aagaagtattgatcaagctttggatggcagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggtaatgaaattttcggtgatct |
6554774 |
T |
|
| Q |
292 |
ggagtccatttcgtttttcca |
312 |
Q |
| |
|
||||| ||||| |||||||| |
|
|
| T |
6554775 |
tgagtcaatttcatttttcca |
6554795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 92 - 318
Target Start/End: Original strand, 6448924 - 6449150
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||| || ||||| || ||||||||| |||| ||| |
|
|
| T |
6448924 |
attaactcagtactgagattgagttaccataatctcccttccagtctaaagtgttgctttgcctattgctccattttccctaagggttatagatttaaaa |
6449023 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||||| | ||| |||||| |
|
|
| T |
6449024 |
aggatgaattgatcaagctttggatggcagaaggtatgttgaagtgttgcggatcagacaaaagtgaagaagagtttggtaatgaaattttctgtgatct |
6449123 |
T |
|
| Q |
292 |
ggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
6449124 |
tgagtcaatttcatttttccaacaatc |
6449150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 105 - 314
Target Start/End: Complemental strand, 8589608 - 8589399
Alignment:
| Q |
105 |
tgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgat |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| |||| ||| ||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8589608 |
tgagattaagttaccataatctcccttccattctaaagcattgcttttcttattgttccatttttcccaagggttatgaatttgaaaaaggtgaattgat |
8589509 |
T |
|
| Q |
205 |
caagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcg |
304 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| | | ||||||||||||||||| | |||||||| | |||| |||||| ||||| ||||| |
|
|
| T |
8589508 |
caagctctggatggcagaaggtttattgaagtgttgcggatcacacaaaagtgaagaagagttaggtaatgaaattttcggtgatcttgagtcaatttca |
8589409 |
T |
|
| Q |
305 |
tttttccaac |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
8589408 |
tttttccaac |
8589399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 93 - 318
Target Start/End: Complemental strand, 8454545 - 8454320
Alignment:
| Q |
93 |
ttaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaa |
192 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||| ||||||||||||||| || ||||| |||| |
|
|
| T |
8454545 |
ttaactcagtactgagattgagttaccataatctcccttctaatctaaagcgttgcttttcctattgttccatttttcccaagggtcataaatttaaaaa |
8454446 |
T |
|
| Q |
193 |
agatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctg |
292 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||| | |||||||| |||| |||||| |
|
|
| T |
8454445 |
agatgaactgatcatgctttggatggcagaaggtttgttgaagtgttgcggatctaacagaagtgaagaagagtttggtaatgaaagtttcgctgatctt |
8454346 |
T |
|
| Q |
293 |
gagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
| ||| ||||| |||||||||||||| |
|
|
| T |
8454345 |
gtgtcaatttcttttttccaacaatc |
8454320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 92 - 318
Target Start/End: Original strand, 6591462 - 6591688
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||| ||||| ||| |||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| | |
|
|
| T |
6591462 |
attaaccccgtactgagattgagttaccttaacctcccatccaatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagtttgaga |
6591561 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||||| || |||| ||||| |||||| || |||| |
|
|
| T |
6591562 |
agggtgaattaatcaagctttggatggcagaaggcttgctaaagtgttgggaaagacacaaaagtgaagaaaagttgggcaatgaattcttcaatcatct |
6591661 |
T |
|
| Q |
292 |
ggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
| ||| || ||||||||||||||||| |
|
|
| T |
6591662 |
agtgtcaatatcgtttttccaacaatc |
6591688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 314
Target Start/End: Complemental strand, 6917008 - 6916799
Alignment:
| Q |
105 |
tgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgat |
204 |
Q |
| |
|
||||| ||||||||| ||||||| |||| |||| |||| ||||||||| || ||||| || ||||||||||| ||||| ||||| || | |||||| || |
|
|
| T |
6917008 |
tgagaatgagttaccttaatctctcttcaaatctgaagcattgttttgcttactgttccatatttcccaagggctatgagtttgagaagggtgaattaat |
6916909 |
T |
|
| Q |
205 |
caagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcg |
304 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| || ||| ||||||| | ||| || || |
|
|
| T |
6916908 |
caagctttggatggcagaaggtttgctgaagtgttgtggaagagacaaaagtgaagaagagttgggtaatgaatttttcaatgatctagtgtcaatatca |
6916809 |
T |
|
| Q |
305 |
tttttccaac |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
6916808 |
tttttccaac |
6916799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 283
Target Start/End: Complemental strand, 6900008 - 6899817
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||| ||||||||| |||| |||| |||||||| |||||||| | ||||| ||||| ||||| ||||| | |
|
|
| T |
6900008 |
attaaccctttattgaaattgagttaccttaacctcccttccaatctgaagcattgttttgattattgttctttatttccaaagggctatgagtttgaga |
6899909 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttc |
283 |
Q |
| |
|
| | |||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
6899908 |
agggtgaagtaatcaagctttggatggcagaaggtttgctgaagtgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttc |
6899817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 318
Target Start/End: Complemental strand, 6168791 - 6168585
Alignment:
| Q |
112 |
gagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgatcaagctt |
211 |
Q |
| |
|
|||||||| ||| |||||||| |||| |||| ||||||||| |||||||| || ||||||||||||||| | |||||||| |||| ||| ||||||||| |
|
|
| T |
6168791 |
gagttaccttaacctcccttcaaatctgaagcattgttttgcatattgttctatatttcccaagggttataagtttgaaaaggatggattaatcaagctt |
6168692 |
T |
|
| Q |
212 |
tggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcgtttttcc |
311 |
Q |
| |
|
||||||||| |||||||| | ||||||||| || |||||||| |||||||||| |||||||||| ||||| ||| |||| | ||| || || ||||||| |
|
|
| T |
6168691 |
tggatggcacaaggtttgctaaagtgttgcggaaaagacaaaaatgaagaagagttgggtaatgaattctttgatcatctagtgtcaatgtcatttttcc |
6168592 |
T |
|
| Q |
312 |
aacaatc |
318 |
Q |
| |
|
||||||| |
|
|
| T |
6168591 |
aacaatc |
6168585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 105 - 318
Target Start/End: Complemental strand, 6882411 - 6882198
Alignment:
| Q |
105 |
tgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgat |
204 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| |||||||||||||| |||||||| || ||||||||||| ||||| |||| || | |||| | || |
|
|
| T |
6882411 |
tgagattgagttaccttatcctcccttccaatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagcttgagaagggtgaactaat |
6882312 |
T |
|
| Q |
205 |
caagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcg |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| | |||||||| |||||| || || ||| ||| || || |
|
|
| T |
6882311 |
taaactttggatggcagaaggtttgttgaagtgtcacaaaagagacaaaagcgaacaagagttaggtaatgaattcttcaatcatttggtgtcaatatct |
6882212 |
T |
|
| Q |
305 |
tttttccaacaatc |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6882211 |
tttttccaacaatc |
6882198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 92 - 291
Target Start/End: Original strand, 6722203 - 6722402
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||||| ||| | |||||||||| | ||| |||||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| | |
|
|
| T |
6722203 |
attaaccccgtactaagattgagtttctttaacctcccttccgatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagtttgaga |
6722302 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
| |||| | || |||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||| ||| |||| |
|
|
| T |
6722303 |
agagtgaactaattaagctttggatgacagaagatttgttgaagtgttgcggaagagacaaaagtgaacaagagttgggtaatgaattctttgatcatct |
6722402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 92 - 318
Target Start/End: Complemental strand, 7749922 - 7749696
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||||| || ||||||||| ||||| ||| ||||||||| |||| |||||||||||||| |||||||| || ||||| ||||| ||||| ||||| | |
|
|
| T |
7749922 |
attaaccccatactgagattgaattaccttaacctcccttccaatctgaagcgttgttttgcttattgttctatatttccaaagggctatgagtttgaga |
7749823 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||| | |||||||| ||||||||||| ||||||| || |||||||||| |||||| || |||| |
|
|
| T |
7749822 |
agcgtgggttaatcaagctttggatggcagaaggcttgctaaagtgttggggaagagacaaaactgaagaacagttgggtaatgaattcttcaattatct |
7749723 |
T |
|
| Q |
292 |
ggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
| ||| || ||||||||||||||||| |
|
|
| T |
7749722 |
agtgtcaatatcgtttttccaacaatc |
7749696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 312
Target Start/End: Original strand, 4389065 - 4389297
Alignment:
| Q |
80 |
ggtgacaatgaaattaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggtt |
179 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||| || ||||||||| | |||||||| || |||||||| ||| |
|
|
| T |
4389065 |
ggtgacaataacattaattcagtactgagattgagttaccatcatctcccttccattcttaaacgttgtttttcttattgttccatatttcccaaaggtc |
4389164 |
T |
|
| Q |
180 |
atgaatttgaaaaagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagtt |
279 |
Q |
| |
|
| ||||| || |||||| |||||||||||||| || || |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
4389165 |
acatttttgacaagcgtgaattaatcaagctttggatagcggatggtttgttgaagtgttgcggaagtgacaaaagtgaagaagagttgggtaatgagtt |
4389264 |
T |
|
| Q |
280 |
cttcgatgatctggagtccatttcgtttttcca |
312 |
Q |
| |
|
|| | |||||| || || ||||| |||||||| |
|
|
| T |
4389265 |
atttgttgatctagaatcaatttcatttttcca |
4389297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 318
Target Start/End: Original strand, 13270681 - 13270888
Alignment:
| Q |
105 |
tgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgat |
204 |
Q |
| |
|
||||| ||||||||| || || |||||| |||| |||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||| ||| || |
|
|
| T |
13270681 |
tgagaatgagttaccttagcctaccttccaatctgaagcattgttttgcatattgttctatatttcccaagggttatgagtttgaaaaggatggattaat |
13270780 |
T |
|
| Q |
205 |
caagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcg |
304 |
Q |
| |
|
|||||||||||||||| |||||||| | ||| | || || ||||| |||||||||| |||||||| | |||||| ||||||| | ||| |||||| |
|
|
| T |
13270781 |
caagctttggatggcacaaggtttgctaaaggg------aatagccaaaaatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatttcg |
13270874 |
T |
|
| Q |
305 |
tttttccaacaatc |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13270875 |
tttttccaacaatc |
13270888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 104 - 317
Target Start/End: Original strand, 6839053 - 6839266
Alignment:
| Q |
104 |
ttgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattga |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | || || ||||||||||| ||||| | ||||| | ||||| ||| ||||| | |||||||||| |
|
|
| T |
6839053 |
ttgagattgagttaccataacctcccttccagtttgaaacgctgttttgcctactgttctgtatttcctaggggttttgagtttgacagggatgaattga |
6839152 |
T |
|
| Q |
204 |
tcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttc |
303 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||| |||| ||||| ||| | ||| | || ||||||||||| |
|
|
| T |
6839153 |
tcaagctttggatggcagaaggtttgctgaaatactgcggaagagacaaaagtgaagaagaattgggaaatgaattcatggattacctagagtccatttc |
6839252 |
T |
|
| Q |
304 |
gtttttccaacaat |
317 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
6839253 |
atttttcgaacaat |
6839266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 111 - 318
Target Start/End: Complemental strand, 6245188 - 6244987
Alignment:
| Q |
111 |
tgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgatcaagct |
210 |
Q |
| |
|
||||||||| ||| ||||||||| |||| |||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||| ||| ||||| || |
|
|
| T |
6245188 |
tgagttaccttaacctcccttccaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaaact |
6245089 |
T |
|
| Q |
211 |
ttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcgtttttc |
310 |
Q |
| |
|
||||||||||||||||||| | ||| | || || |||| |||||||||| |||||||| | |||||| ||||||| | ||| || ||||||||| |
|
|
| T |
6245088 |
ttggatggcagaaggtttgataaaggg------aatagccaaagatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttc |
6244995 |
T |
|
| Q |
311 |
caacaatc |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
6244994 |
caacaatc |
6244987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5298720 - 5298427
Alignment:
| Q |
1 |
attggggaatctcttgcaaagaaaatcttctcaaggtgaatggtctaacatattggagactgata-gtggaga--agcaaagggtgacaatgaaattaac |
97 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||||||| ||| ||||||||||| ||| |||| | | || ||||||| | | | |||||| |
|
|
| T |
5298720 |
attggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaagatattggagacagatctgtggtgtttatcagagggtgagagtaacattaac |
5298621 |
T |
|
| Q |
98 |
ccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatg |
197 |
Q |
| |
|
|||| ||||| ||||||| |||| |||||||||| |||| |||||||||||| | |||||||| || ||||| | |||||| ||| || | || |
|
|
| T |
5298620 |
tcagttttgaggttgagtttccatcatctcccttcaaatctgaagcgttgtttttcttattgttccatatttccaagaggttatattttttgcaaggctg |
5298521 |
T |
|
| Q |
198 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| || || |||| |||||||||| |||||||||| ||||| || ||||| |
|
|
| T |
5298520 |
aattaatcaagctttggatggcagaaggtttgttgaagtgctgcagaattgataaaactgaagaagagttgggtaatgaattctttgacgatct |
5298427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 6259104 - 6258979
Alignment:
| Q |
104 |
ttgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattga |
203 |
Q |
| |
|
|||||| ||||||||| || ||||||||| |||| |||| ||||||||| |||||||| || ||||||||||||||||| |||||||| | |||||| | |
|
|
| T |
6259104 |
ttgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaagggtgaattaa |
6259005 |
T |
|
| Q |
204 |
tcaagctttggatggcagaaggtttg |
229 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
6259004 |
tcaagctttggatggcaaaaggtttg |
6258979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 5268044 - 5267725
Alignment:
| Q |
2 |
ttggggaatctcttgcaaagaaaatcttctcaaggtgaatggtctaacatattggagactgata-gtggaga--agcaaagggtgacaatgaaattaacc |
98 |
Q |
| |
|
||||| |||||||||| |||||||| |||||| ||||||| ||| ||||||||||| |||| |||| | | || | ||||||| | | ||||| |
|
|
| T |
5268044 |
ttgggaaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattggagacagatatgtggcgtttatcagaaggtgacattaacattaatt |
5267945 |
T |
|
| Q |
99 |
cagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatga |
198 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||| ||||| |||||| | |||||||| | |||||||| || | ||||| |||| ||| |
|
|
| T |
5267944 |
cagtactgagattgagttaccatcatctcccttccaatctgaagcgctgtttttcttattgttccttatttcccaaaggcaagtggtttgacaaaggtga |
5267845 |
T |
|
| Q |
199 |
attgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtcc |
298 |
Q |
| |
|
||| ||||| ||||||||||| || |||||| ||||||| || || ||| ||||| |||||||||||||||||| | || || |||||||| | ||| |
|
|
| T |
5267844 |
attaatcaaactttggatggccgacggtttgctgaagtgccgcggaacagaaaaaagcgaagaagagctgggtaatcaattattagatgatctagtgtca |
5267745 |
T |
|
| Q |
299 |
atttcgtttttccaacaatc |
318 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
5267744 |
atttcatttttccagcaatc |
5267725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 6142173 - 6142064
Alignment:
| Q |
125 |
ctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgatcaagctttggatggcagaag |
224 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| |||||||| || ||||||||||| ||||| ||||| || | |||||| |||||||||||||||||||||| |
|
|
| T |
6142173 |
ctcccttctgatctgaagcattgttttgcttattgttctatatttcccaagggctatgagtttgagaagggtgaattaatcaagctttggatggcagaag |
6142074 |
T |
|
| Q |
225 |
gtttgttgaa |
234 |
Q |
| |
|
|||| ||||| |
|
|
| T |
6142073 |
gtttcttgaa |
6142064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 318
Target Start/End: Complemental strand, 6265578 - 6265385
Alignment:
| Q |
125 |
ctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgatcaagctttggatggcagaag |
224 |
Q |
| |
|
|||||| || |||| |||||||||||||| | ||| || | | |||||||||||||||| ||||| | | |||||| |||| ||||||||||||||||| |
|
|
| T |
6265578 |
ctccctcccaatctgaagcgttgttttgcttgttggtctaatcttcccaagggttatgagtttgaggagggtgaattaatcaggctttggatggcagaag |
6265479 |
T |
|
| Q |
225 |
gtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
||||||| || |||||| |||| ||||||| |||||||| | || ||||| ||||||||| | || | ||| || || |||||||||||||| |
|
|
| T |
6265478 |
gtttgttaaattgttgcggaagaaacaaaagcaaagaagagttagggaatgaattcttcgatcaactagtgtcaatgtcatttttccaacaatc |
6265385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 384
Target Start/End: Original strand, 6839296 - 6839327
Alignment:
| Q |
353 |
atgcatgatcttgttaatgatttggcaaaatc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6839296 |
atgcatgatcttgttaatgatttggcaaaatc |
6839327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 7587509 - 7587475
Alignment:
| Q |
353 |
atgcatgatcttgttaatgatttggcaaaatcaga |
387 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
7587509 |
atgcatgatcttgtcaatgatttggcaaaatcaga |
7587475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 8471204 - 8471170
Alignment:
| Q |
353 |
atgcatgatcttgttaatgatttggcaaaatcaga |
387 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
8471204 |
atgcatgatcttgtcaatgatttggcaaaatcaga |
8471170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 6795003 - 6795036
Alignment:
| Q |
353 |
atgcatgatcttgttaatgatttggcaaaatcag |
386 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
6795003 |
atgcatgatcttgtcaatgatttggcaaaatcag |
6795036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 5280464 - 5280344
Alignment:
| Q |
198 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtc |
297 |
Q |
| |
|
|||| |||||||||||||||||||| || ||| |||| |||| | | ||| || |||||| ||||| ||||| |||| || || ||| |||| ||||| |
|
|
| T |
5280464 |
aattaatcaagctttggatggcagatgggttgctgaaatgttttagagcagaaaagagtgaaaaagagttgggtgatgaattttttgattatcttgagtc |
5280365 |
T |
|
| Q |
298 |
catttcgtttttccaacaatc |
318 |
Q |
| |
|
||||||||| | |||||||| |
|
|
| T |
5280364 |
aatttcgtttatacaacaatc |
5280344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 6573338 - 6573658
Alignment:
| Q |
1 |
attggggaatctcttgcaaagaaaatcttctcaaggtgaatggtctaacatattggagactgata-gtgga--gaagcaaagggtgacaatgaaattaac |
97 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||| ||||||| |||| | | | ||||| | ||||||||||| |
|
|
| T |
6573338 |
attggggaatctcttgcaaagaaaattttctcagggtgaatggtttaagatattggaaactgatatgtggcatgtatcgaagggcaatgatgaaattaac |
6573437 |
T |
|
| Q |
98 |
ccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatg |
197 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
6573438 |
tcggtattgagattgagttatcataatctcccttccaatctaaagcgttgttttgcatattgttccatatttcccaagggttataaatttgaaaaagatg |
6573537 |
T |
|
| Q |
198 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtc |
297 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||| |||||||||| ||||| |||||||| ||||| |
|
|
| T |
6573538 |
aattgatcaacctttggatggctgaaggtttgctgaaatgttgcggaagagacaaaagtgaacaagagttgggtaatgaattcttggatgatctagagtc |
6573637 |
T |
|
| Q |
298 |
catttcgtttttccaacaatc |
318 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
6573638 |
catttcatttttccaacaatc |
6573658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 92 - 318
Target Start/End: Original strand, 7614 - 7840
Alignment:
| Q |
92 |
attaacccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaa |
191 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| ||||| | |||||| ||| |||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
7614 |
attaactcagtactgagattgagttaccataatctcccttctgatctaaggcgttgcttttcctattgttccatttttcccaagggctatagatttgaaa |
7713 |
T |
|
| Q |
192 |
aagatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatct |
291 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||| | || ||||| | |||| |||||| |
|
|
| T |
7714 |
aagaagtattgatcaagctttggatgggagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggcaatgaaattttcggtgatct |
7813 |
T |
|
| Q |
292 |
ggagtccatttcgtttttccaacaatc |
318 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
7814 |
tgagtcaatttcatttttccaacaatc |
7840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 105 - 318
Target Start/End: Original strand, 35140494 - 35140707
Alignment:
| Q |
105 |
tgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgat |
204 |
Q |
| |
|
||||| ||||||||| || ||||||||| |||| |||| ||||||||| |||| ||| || ||||||||||||||||| |||||||| |||| ||| || |
|
|
| T |
35140494 |
tgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaagggttatgagtttgaaaatgatggattaat |
35140593 |
T |
|
| Q |
205 |
caagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcg |
304 |
Q |
| |
|
||||||||||||| ||||||||||| | ||| |||| ||| || ||||| |||||||||| |||||||| | |||||| ||||||| | ||| || ||| |
|
|
| T |
35140594 |
caagctttggatgacagaaggtttgctaaagggttgggaaatagccaaaaatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcg |
35140693 |
T |
|
| Q |
305 |
tttttccaacaatc |
318 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
35140694 |
tttttccaaaaatc |
35140707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 98 - 314
Target Start/End: Original strand, 25242276 - 25242493
Alignment:
| Q |
98 |
ccagtattgagattgagttaccataatctcccttccgatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatg |
197 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||| |||| |||||||||||| || ||||| || ||||| || ||||||| ||| || | || |
|
|
| T |
25242276 |
ccagcattaagattgagttaccataatctcccttccaatctgaagcgttgttttagttactgttccatatttcctaaaggttatgctttttgcaagggtg |
25242375 |
T |
|
| Q |
198 |
aattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgat-ctggagt |
296 |
Q |
| |
|
|||| |||||||||||||| ||| |||| ||| |||||||||| | || | ||||||||||||||||| |||||| ||||| ||||||||| | |||| |
|
|
| T |
25242376 |
aattaatcaagctttggatagcataaggcttgctgaagtgttgtagaacaaacaaaagtgaagaagagttgggtagagagttattcgatgataatagagt |
25242475 |
T |
|
| Q |
297 |
ccatttcgtttttccaac |
314 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
25242476 |
cgatttcatttttccaac |
25242493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 217 - 287
Alignment:
| Q |
317 |
tcgataaatccactgtatagtcgtaccatactggtaatgcatgatcttgttaatgatttggcaaaatcaga |
387 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
217 |
tcgataaatccaatgtatagtagtaccatattggtaatgcatgatcttgttaatgatttggcaaaatcaga |
287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 140 - 190
Alignment:
| Q |
171 |
ccaagggttatgaatttgaaaaagatgaattgatcaagctttggatggcag |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
140 |
ccaagggttatgaatatgaaaaagatgaattgattaagctttggatggcag |
190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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