View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_9 (Length: 356)
Name: NF13490_high_9
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_9 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0330 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 356
Target Start/End: Complemental strand, 18344099 - 18343761
Alignment:
| Q |
22 |
gaacctgtgaatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18344099 |
gaacctgtgaatacctaagattatattaaatttcataatcttactgattcattagatgggatggcggacggaactaagaattcattattttttgaggagt |
18344000 |
T |
|
| Q |
122 |
tgtggactaacccaacattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaata |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18343999 |
tgtggactaacccaacattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggatttttttgaatttagaaatttttgccaata |
18343900 |
T |
|
| Q |
222 |
tgataat----nnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaa |
317 |
Q |
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| T |
18343899 |
tgataataaaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataagaa |
18343800 |
T |
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| Q |
318 |
tccatatttggttctatatcaaagcaagatatacaaatt |
356 |
Q |
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| T |
18343799 |
tccatatttggttctatatcaaagcaagatatacaaatt |
18343761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 36638870 - 36639000
Alignment:
| Q |
61 |
cttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga |
160 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36638870 |
cttactaattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga |
36638969 |
T |
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| Q |
161 |
aagagtaaatattcgcccgcgaaaatgtgga |
191 |
Q |
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| T |
36638970 |
aagagtgaatattcgcccgcgaaaatgtgga |
36639000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 36639056 - 36639090
Alignment:
| Q |
240 |
aaatatggattcgttagaaccttatatcaaaacaa |
274 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
36639056 |
aaatatggattcgttagaacattatatcaaaacaa |
36639090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 163237 - 163582
Alignment:
| Q |
22 |
gaacctgtgaatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagt |
121 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
163237 |
gaacttgtgaatacttaagattatattaaatttcataatcttactgattcattagatgggatggtggacggaactaagaattcattattttttgaggagt |
163336 |
T |
|
| Q |
122 |
tgtggactaacccaacattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtgga-nnnnnnngaatttagaaatttttgcca- |
218 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
163337 |
tgtggactaatccaacatcacatcttaaatttataatgaaagagtaaaatattcgcccgcgaaaatgtggatttttttttaatttagaaatttttgccaa |
163436 |
T |
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| Q |
219 |
---atatgataat-----nnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtct |
310 |
Q |
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| T |
163437 |
tatatatgataataaaaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtct |
163536 |
T |
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| Q |
311 |
ataagaatccatatttggttctatatcaaagcaagatatacaaatt |
356 |
Q |
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|||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
163537 |
ataaaaatccatatttggttttatatccaagcaagatatacaaatt |
163582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 31 - 336
Target Start/End: Original strand, 9857643 - 9857946
Alignment:
| Q |
31 |
aatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggacta |
130 |
Q |
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||||||| | |||||||||||||| ||||||||| |||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
9857643 |
aatacctcaaattatattaaatttaataatcttattgattcattagattggatggtggacaaaactaagaattcattattttttgaggagttgtgggcta |
9857742 |
T |
|
| Q |
131 |
acccaacattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataatn |
229 |
Q |
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| | ||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| ||||||| ||||||||||||||||||| | |
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| T |
9857743 |
atctgacattacatcttaaatttataatgaaagagtaaaatattcacatgtgaaaatgtggatttttttgaatttataaatttttgccaatatgattaaa |
9857842 |
T |
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| Q |
230 |
nnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggt |
329 |
Q |
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|| ||||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| || |
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| T |
9857843 |
aaaaaaagacaaatatggattttttagaacct--tatcaaaacaacattatctagttagacat-gatagcaaaaatggtctatacgaatccatatttcgt |
9857939 |
T |
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| Q |
330 |
tctatat |
336 |
Q |
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||||||| |
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| T |
9857940 |
tctatat |
9857946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 13478 - 13440
Alignment:
| Q |
318 |
tccatatttggttctatatcaaagcaagatatacaaatt |
356 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
13478 |
tccatatttggttctatatcaaagcaaaatatacaaatt |
13440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 31878210 - 31878258
Alignment:
| Q |
143 |
atcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtgga |
191 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| ||| |||||||||| |
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| T |
31878210 |
atcttaaatttataattaaagagtaattattcggtcgcaaaaatgtgga |
31878258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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