View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13491_low_2 (Length: 486)
Name: NF13491_low_2
Description: NF13491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13491_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 351
Target Start/End: Complemental strand, 15427617 - 15427267
Alignment:
| Q |
2 |
atccaaaaacgacaacatagtatcaccatacacataaagtgtatacaaccgttcctaattcacccacctagagagaccaattnnnnnnnttaacaataat |
101 |
Q |
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| T |
15427617 |
atccaaaaacgacaacatagtatcactatacacataaagtgtatacaaccattcctaattcacccacctagagagaccaattaaaaaaattaacaataat |
15427518 |
T |
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| Q |
102 |
aaagatactgaaataaatggatataatgaagggtaacaacttgatcaattaatggtcccatcagtttcatataagctttcctgcaaaggaatattgaaaa |
201 |
Q |
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| T |
15427517 |
aaagatactgaaataaatggatataatgaagggtaacaacttgatcaattaatggtcccatcagtttcatataagctttcctgcaaaggaatattgaaaa |
15427418 |
T |
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| Q |
202 |
tacataaccaaatgagaaaaattcaacatgtgcataagttgccacacaaaaaacatgcatataagttgaggtgtc-nnnnnnntgtgcataattaagatg |
300 |
Q |
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| T |
15427417 |
tacataaccaaatgagaaaaattcaacatgtgcataagttgccacacaaaaaacatgtatataagttgaggtgtcaaaaaaaatgtgcataattaagatg |
15427318 |
T |
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| Q |
301 |
aagaataaaagtatgttataaagaaaatgaccttgttataattgggttcaa |
351 |
Q |
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| T |
15427317 |
aagaataaaagtatgttataaagaaaatgaccttgttataattgggttcaa |
15427267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 15427201 - 15427140
Alignment:
| Q |
417 |
aaagatctgatccatggttggaagtt-agtcccagtggatttagaggtagttggtgatgatg |
477 |
Q |
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| T |
15427201 |
aaagatctgatccatggttggaagtttagtcccagtggatttagaggtagttggtgatgatg |
15427140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 15436622 - 15436570
Alignment:
| Q |
417 |
aaagatctgatccatggttggaagtt-agtcccagtggatttagaggtagttg |
468 |
Q |
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| T |
15436622 |
aaagatctgccccatggttggatgtttagtcccagttgatttagaggtagttg |
15436570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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