View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13491_low_3 (Length: 413)
Name: NF13491_low_3
Description: NF13491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13491_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 7836181 - 7836510
Alignment:
| Q |
18 |
ctcagtgcaaatacaaccatcatccctatgctacccccctcctcctattcacttctactagtttcacttttcatttcatgggtcttgatgggtgctaggg |
117 |
Q |
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| T |
7836181 |
ctcagtgcaaatacaaccatcatccctatgctacccccctccccctattcacttctactagtttcacttttcatttcatgggtcttgatgggtgctaggg |
7836280 |
T |
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| Q |
118 |
aacaacaaggccttctattctattctatactaggccctctctatttccccttaataaaaccaaaattatcaacactaacatttcacttgtctttccttcc |
217 |
Q |
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| T |
7836281 |
aacaacaaggccttctattctattctatactaggccctctctatttccccttaataaaaccaaaattatcaacactaacatttcacttgtctttcc---- |
7836376 |
T |
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| Q |
218 |
tttccttaatcaaaacaacattaccctttccagatannnnnnnnnnnnnnnnacacccatcttcccttgtgtctcccaatgtcaatctaactagtgtaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7836377 |
-ttccttaatcaaaacaacattaccctttccagata--ctctctctctctctacacccatcttcccttgtgtctcccaatgtcaatctaactagtgcaat |
7836473 |
T |
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| Q |
318 |
taaaatattctaatctaatctacctacggaggtgagt |
354 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
7836474 |
taaaatattttaatctaatctacctacggaggtgagt |
7836510 |
T |
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