View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13491_low_4 (Length: 376)
Name: NF13491_low_4
Description: NF13491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13491_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 16282141 - 16281786
Alignment:
| Q |
2 |
ctgaaactaactttgaagattaagtctacttttcgctacaacgcagttttcagagtgctaacaatgacgaactaaaatcaacacaacttagcacatagaa |
101 |
Q |
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| T |
16282141 |
ctgaaactaactttgaagattaactctacttttcgctacaacgcagttttcagagtgctagcaatgacgaacaaaaatcaacacaact-agcacatagaa |
16282043 |
T |
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| Q |
102 |
tcacaattttcagactaaaatgctaacagcaacaaactaaaatcaacacaaaatctacacgcggatcagaatgcactaattcttcatcggagaaacagaa |
201 |
Q |
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| T |
16282042 |
tcacaattttcagagtaaaatgctaacagcaacaaactaaaatcaacacaaattctacacgcggatcagaacgcactaattcttcatcggagaaacagaa |
16281943 |
T |
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| Q |
202 |
agtaaactgaaaattgaaactaacctcgtgattttgaaattcagaaattacactacattagaatctcaatttagaaattaaaactaacgttacaatttta |
301 |
Q |
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| T |
16281942 |
agtaaactgaaaattgaaactaaactcgtgattttgaaattccgaaattacactacattagaatctcaatttagaaattaaaactaacgttacaatttta |
16281843 |
T |
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| Q |
302 |
aaaatgaaagtaacacatagaatctcaattttcagagcgaaatgaaaatctaacagt |
358 |
Q |
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| T |
16281842 |
aaaatgaaagtaacacatagaatctcaattttcagagcgaaatgaaaatctaacagt |
16281786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 16282312 - 16282239
Alignment:
| Q |
29 |
acttttcgctacaacgcagttttcagagtgctaacaatgacgaactaaaatcaacacaacttagcacatagaatc |
103 |
Q |
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| T |
16282312 |
acttctcgctacaatgcagttttgagagtgctaacagtgacgaacgaaaatcaacataac-gagcacatagaatc |
16282239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 16282564 - 16282515
Alignment:
| Q |
96 |
atagaatcacaattttcagactaaaatgctaacagcaacaaactaaaatc |
145 |
Q |
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| T |
16282564 |
atagaatctcaattttcagagtaaaatgctaacagtaacaaacaaaaatc |
16282515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 16282395 - 16282343
Alignment:
| Q |
140 |
aaaatcaacacaaaatctacacgcggatcagaatgcactaattcttcatcgga |
192 |
Q |
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| T |
16282395 |
aaaatcaacataaaatctacatgaggctcaaaatacactaattcttcatcgga |
16282343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 16282452 - 16282408
Alignment:
| Q |
314 |
acacatagaatctcaattttcagagcgaaatgaaaatctaacagt |
358 |
Q |
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| T |
16282452 |
acacatagaatctcaattttcagagtgaaatgtaatgctaacagt |
16282408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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