View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_high_15 (Length: 259)
Name: NF13492_high_15
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_high_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 30500478 - 30500647
Alignment:
| Q |
81 |
ggtgaacaactcttgagataattttaagtatacaatttttattggacattaaatgaagacaatacaattaattaaatggcaccctataagttataactct |
180 |
Q |
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| T |
30500478 |
ggtgaacaactcttgagataattttaagtatacaatttttattggacattaaatgaagacaataaaattaattaaatggcaccc-------tataactct |
30500570 |
T |
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| Q |
181 |
atctttattttctcacctttttatcaattttacggattactaaaatacacaaaacaaaacacaagagagcaacaaattt |
259 |
Q |
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| T |
30500571 |
atctttattttctcaactttttatcaattttacggattactaaaatacac--aacaaaaaacaagagaacaacaaattt |
30500647 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 30500399 - 30500435
Alignment:
| Q |
10 |
aagaatatacgaggcataaaggtaagtattgagtttt |
46 |
Q |
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| T |
30500399 |
aagaaaatacgaggcataaaggtaagtattgggtttt |
30500435 |
T |
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