View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_high_3 (Length: 623)
Name: NF13492_high_3
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 605
Target Start/End: Complemental strand, 6250896 - 6250308
Alignment:
| Q |
16 |
aatattccaaaagttaataagggggagaaaaagtaatggaccttataacacaattcactgtttccatcgaaagaatccaaataacctgaaacacaaatca |
115 |
Q |
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| T |
6250896 |
aatattcccaaagttaataagggggagaaaaagtaatggaccttataacccaagtcactgtttccatcgaaagaatccaaataacctgaaacacaaatca |
6250797 |
T |
|
| Q |
116 |
aatcatttggtttcaagtgttcataagcaatttcagccacattgttccacatcataagaagcaccctgttagcaaaacgcagaacaaaatgtccgttttg |
215 |
Q |
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| T |
6250796 |
aatcatttggtttcaagtgttcataagcaatttcagccacattgttccacatcataagaagcaccctgttaacaaaacgcagaacaaaatgtccgttttg |
6250697 |
T |
|
| Q |
216 |
aatacacaaacaccaaatcaaaacgaacaataattcattttcnnnnnnnnnnnnnnnnngagaagaacgaaccaaaaaggtgatctatcaggtttttgaa |
315 |
Q |
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| T |
6250696 |
aatacacagacaccaaatcaaaacgaacaataattcattttcaaaaaaagaaaaaaaa-gagaagaacgaaccaaaaaggtgatctatcaggtttttgaa |
6250598 |
T |
|
| Q |
316 |
cacgaagcgtagtgtaaactccaaaatcaccgatttttgagttcacgtgtttaacttcacgcgccaccgaaccgatgaagctagcggagttttcaagcca |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6250597 |
cacgaagcgtagtgtaaactccaaaatcaccgaattttgagttcacgtgtttaacttcacgcgccaccgaaccgataaagctagcggagttttcaagccg |
6250498 |
T |
|
| Q |
416 |
tggtttccagcgaatcgttgcgggacgctggaatttgagagcgtggttgtaaacggagctggttcccggtacgacatcgtcgaagtagtgcgatgatgat |
515 |
Q |
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| T |
6250497 |
tggtttccagcgaatcgttgcgggacgctggaatttgagagcgtggttgtaaacggagctggttcccggtacgacatcgtcgaagtagtgcgatgatgat |
6250398 |
T |
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| Q |
516 |
tttgtcgggtgatttgttgtggagaatgagaaacatttgtgcaatatcgatggagtttgaattggttttgcgaagagggagcgaagaatg |
605 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
6250397 |
tttgtcgggtgattagttgtggagaatgagaaacatttgtgcaatatcgatggagtttgaatcggttttgcgaagagggagcgaaaaatg |
6250308 |
T |
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