View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13492_high_6 (Length: 391)
Name: NF13492_high_6
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 176 - 381
Target Start/End: Complemental strand, 30996789 - 30996584
Alignment:
| Q |
176 |
tgattgatagaacttgttcttggaactattgtaaagatataatgtgaacagttttgaaggaactattgcaggtttggtgtcacagatgttaaaacttctt |
275 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30996789 |
tgattgacagaacttgttcttggaactattgtaaagatataatgtgaacggttttgaaggaactattgcaggtttggtgtcacagatgttaaaacttctt |
30996690 |
T |
|
| Q |
276 |
gcagtgatgttaaatttgtaaatccatgtgaaatgacatgaaaactgaaagaaagnnnnnnngctgaggtgatgatgagtgaggataacaattttcacag |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30996689 |
gcagtgatgttaaatttgtaaatccatgtgaaatgacatgaaaactgaaagaaagaaaaaaagctgaggtgatgatgagtgaggataacaattttcacag |
30996590 |
T |
|
| Q |
376 |
cctttg |
381 |
Q |
| |
|
|||||| |
|
|
| T |
30996589 |
cctttg |
30996584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 30996981 - 30996830
Alignment:
| Q |
18 |
caagatatttgggggatttgagagaatgagatttggtggatttgagattatttttagaaaaggaaacaatttgggagaaaaatgggtatagattggcaat |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
30996981 |
caagatatttggaggatttgagagaatgagatttggtggatttgagattatttttagaaaaggaaacgatttgggagaaaaatgggtagagatttgcaag |
30996882 |
T |
|
| Q |
118 |
aagggttttacagcgcaggttgtgcgaaaatgagaacgcaggacttgcaaaa |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30996881 |
aagggttttacagcgcaggttttgcgaaaatgagaacgcaggacttgcaaaa |
30996830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University