View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_high_9 (Length: 362)
Name: NF13492_high_9
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 26 - 344
Target Start/End: Complemental strand, 29871181 - 29870863
Alignment:
| Q |
26 |
aatgcaatagaacttacgcaaccactccttgggaagcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgt |
125 |
Q |
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| T |
29871181 |
aatgcaatagaacttacgcaactactccttgggaagcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgt |
29871082 |
T |
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| Q |
126 |
cccaatcgtctgctcgcttcggctagacgctaacccgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcc |
225 |
Q |
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| T |
29871081 |
cccaatcgtctgctcgcttcggctagacgctaacccgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcc |
29870982 |
T |
|
| Q |
226 |
tcctcatcttcgtcgacacacgattgctgcgatcttgttcccatcgtttggcaacaaaaccctaattcagttgtagtttcgttttctgaggtgaaatgat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29870981 |
tcctcatcttcgtcgacacacgattgctgcgatcttgttcccatcgtttggcaacaaaaccctaattcagttgtagtttcgttttctgaggtgaaatgat |
29870882 |
T |
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| Q |
326 |
cgagtgcagagggagaatt |
344 |
Q |
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| T |
29870881 |
cgagtgcagagggagaatt |
29870863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 29865595 - 29865403
Alignment:
| Q |
61 |
gcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgtcccaatcgtctgctcgcttcggctagacgctaacc |
160 |
Q |
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| T |
29865595 |
gcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaac- |
29865497 |
T |
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| Q |
161 |
cgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcctcctcatcttcgtcgacacacgattgctgcg |
256 |
Q |
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| T |
29865496 |
--ccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaacccatcaattcctcatcctcttcgtccacagacgattgatgcg |
29865403 |
T |
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