View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13492_low_1 (Length: 1932)
Name: NF13492_low_1
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1057; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1057; E-Value: 0
Query Start/End: Original strand, 20 - 1198
Target Start/End: Original strand, 5621028 - 5622206
Alignment:
| Q |
20 |
ctactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataacttgtctttaagta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621028 |
ctactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataacttgtctttaagta |
5621127 |
T |
|
| Q |
120 |
tctactatggaatctttttcaatttttcgtcagnnnnnnn-gtccgatgacattacactggccattgataaccagataccacatgtagaactatattatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621128 |
tctactatggaatctttttcaatttttcgtcagttttttttgtccgatgacattatactggccattgataaccagataccacatgtagaactatattatt |
5621227 |
T |
|
| Q |
219 |
ggttttactttcctctttattaaaatggtgtaaaga-tgatccaaattcatctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtac |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621228 |
ggttttacttacctctttattaaaatggtgtaaagaatgatccaaattcatctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtac |
5621327 |
T |
|
| Q |
318 |
cagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggttcagttttcatacataaatttatatcttttaacagggatgagggagtcc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621328 |
cagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggttcagtt--catacataaatttatatcttttaacagggatgagggagtcc |
5621425 |
T |
|
| Q |
418 |
gctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaagcacaataacatggattctttaagagaaactttagagaacattac |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621426 |
actggggaatacagaatggcctttatctttctagaagcacagtggtatattttaagcacaataacatggattctttaagagaaactttagagaacattac |
5621525 |
T |
|
| Q |
518 |
ttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctctaccaggtagatctcgtcgttcatgcatgctgttttatttacttt |
617 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5621526 |
ttccatatataagaggaccaagaatttgaggcgttatattgtcattgaagctctctaccaggtagatctcatcgttcatgcatgctgttatatttacttt |
5621625 |
T |
|
| Q |
618 |
acacatctgtaccgtgcttccaatggagcgcgtacaacatttaggtttaaaatcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggt |
717 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621626 |
acacatctgtactgtgcttctgatggagcgtgtacaacatttaggtataaaatcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggt |
5621725 |
T |
|
| Q |
718 |
aaattgtactatatgaactactatttctgcagagatattacagtaattagaaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttga |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621726 |
aaattgtactatatgaactactatttctgctgagatattacagtaattagcaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttga |
5621825 |
T |
|
| Q |
818 |
gtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccattaagt |
917 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621826 |
gtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccattaagt |
5621925 |
T |
|
| Q |
918 |
tgtaatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatcagta |
1017 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621926 |
tgtaatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatcagta |
5622025 |
T |
|
| Q |
1018 |
actattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtatt |
1117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5622026 |
actattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttcgtatt |
5622125 |
T |
|
| Q |
1118 |
ttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgt |
1198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5622126 |
ttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgt |
5622206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1253 - 1919
Target Start/End: Original strand, 5638469 - 5639137
Alignment:
| Q |
1253 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
1352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
1353 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
1452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
5638668 |
T |
|
| Q |
1453 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtnnnnnnn-tagtcatggtttgt |
1551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5638669 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgt |
5638768 |
T |
|
| Q |
1552 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
1651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638769 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
5638868 |
T |
|
| Q |
1652 |
tttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagt |
1750 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5638869 |
tttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagt |
5638968 |
T |
|
| Q |
1751 |
acgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
1850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638969 |
acgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
5639068 |
T |
|
| Q |
1851 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
1919 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639069 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
5639137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 1833 - 1899
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
1833 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1899 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1191 - 1232
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
1191 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
1232 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-67
Query Start/End: Original strand, 1046 - 1200
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
1046 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
1145 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
|
| Q |
1146 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
1200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 374 - 584
Target Start/End: Complemental strand, 30635428 - 30635218
Alignment:
| Q |
374 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
473 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
30635428 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
30635329 |
T |
|
| Q |
474 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
573 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
30635328 |
cacaatgacatggattctttagaagaaactttagagaagcttacttctaagtataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
30635229 |
T |
|
| Q |
574 |
accaggtagat |
584 |
Q |
| |
|
||||||||||| |
|
|
| T |
30635228 |
accaggtagat |
30635218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 8e-56
Query Start/End: Original strand, 1288 - 1461
Target Start/End: Complemental strand, 30634501 - 30634326
Alignment:
| Q |
1288 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
1387 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
|
| Q |
1388 |
tatagatcaccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
1461 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
|
|
| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 30635718 - 30635631
Alignment:
| Q |
21 |
tactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataactt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
30635718 |
tactcttatggactttccaccatgttcagtgctattcctgctttttctaaaaaaggagatataattgtggcgtaagtatgcataactt |
30635631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-67
Query Start/End: Original strand, 1046 - 1200
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
1046 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
1145 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
|
| Q |
1146 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
1200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-60
Query Start/End: Original strand, 374 - 584
Target Start/End: Complemental strand, 21424229 - 21424019
Alignment:
| Q |
374 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
473 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
21424229 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
21424130 |
T |
|
| Q |
474 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
573 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
21424129 |
cacaatgacatggattctttagaagaaacattagagaagcttagttctaaatataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
21424030 |
T |
|
| Q |
574 |
accaggtagat |
584 |
Q |
| |
|
||||||||||| |
|
|
| T |
21424029 |
accaggtagat |
21424019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-52
Query Start/End: Original strand, 1294 - 1415
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
1294 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
1393 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
|
| Q |
1394 |
tcaccaagtatggtagtgtcat |
1415 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 21424519 - 21424432
Alignment:
| Q |
21 |
tactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataactt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
21424519 |
tactcttatggactttccaccatgttcagtgctattcctgctttttctaaaaaaggagatataattgtggcgtaagtatgcataactt |
21424432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1835 - 1899
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
1835 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1899 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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