View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_low_14 (Length: 308)
Name: NF13492_low_14
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 30501892 - 30501692
Alignment:
| Q |
18 |
ataacattaattatcgttttcaattcagttaggttatgccatccatattagagacatttcaaatctcactctacctactagtg----------------- |
100 |
Q |
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| T |
30501892 |
ataacattaattatcgttttcaattcagttaggttatgccatccatattagagacatttcaaatctcactctacctactagtgaatgtccattgaatgaa |
30501793 |
T |
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| Q |
101 |
-----tactaactccgtctctacatatacataattcatttgactacattagttgaataaagaaagttgatttgtcctctcaaaaatgaagttgatttgta |
195 |
Q |
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| T |
30501792 |
tggtatactaactccgtctctacatatacataattcatttgactacattagttgaataaagaaagttgatttgtcctctcaaaaatgaagttgatttgta |
30501693 |
T |
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| Q |
196 |
g |
196 |
Q |
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| T |
30501692 |
g |
30501692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 30501634 - 30501596
Alignment:
| Q |
255 |
gaaccccttaattatacctttagatcattttttagaggt |
293 |
Q |
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| T |
30501634 |
gaaccccttaattatacctttagatcattttttagaggt |
30501596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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