View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13492_low_15 (Length: 290)
Name: NF13492_low_15
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 33082136 - 33082391
Alignment:
| Q |
19 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
33082136 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatcccttgtttgaaccctctcttcccatttc |
33082235 |
T |
|
| Q |
119 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082236 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccg |
33082335 |
T |
|
| Q |
219 |
ctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082336 |
ctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
33082391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 33091996 - 33092251
Alignment:
| Q |
19 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33091996 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatcccttgtttgaaccctctcttcccatttc |
33092095 |
T |
|
| Q |
119 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092096 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccg |
33092195 |
T |
|
| Q |
219 |
ctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33092196 |
ctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
33092251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 33099492 - 33099747
Alignment:
| Q |
19 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33099492 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatcccttgtttgaaccctctcttcccatttc |
33099591 |
T |
|
| Q |
119 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099592 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccg |
33099691 |
T |
|
| Q |
219 |
ctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33099692 |
ctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
33099747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 33072395 - 33072655
Alignment:
| Q |
19 |
agtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttc |
118 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
33072395 |
agtttcttatcattaatcctctcagctatatttgcaaacctttttttgttgtttctctgccttcaactgatcccttgattgaaccctctcttcccatttc |
33072494 |
T |
|
| Q |
119 |
actgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatca-------tcatgaaccttaattcccgaagctctcttc |
211 |
Q |
| |
|
|||| ||||| || ||||| ||||||| |||||| ||||| || |||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
33072495 |
tctgcatttttatgttgcctcttcttccttttctg--tacttttccttatcaatttaggatcatcatgattcatgaaccttaattcccgaagctctcttt |
33072592 |
T |
|
| Q |
212 |
attgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
274 |
Q |
| |
|
|| | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
33072593 |
gttactactttccatgcttccttcttagcaatagcttcacccttctcagaatcattcttcttc |
33072655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 3931288 - 3931540
Alignment:
| Q |
21 |
tttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttcac |
120 |
Q |
| |
|
||||| |||||||||| ||||||||||||| |||||||||| | ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| | |
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|
| T |
3931288 |
tttcttatcattaatcctctcagctatattatctgaccttttctt-ttgcttctctgccttcaactgatcccttgattgaactctctcttcccatttctc |
3931386 |
T |
|
| Q |
121 |
tgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccgct |
220 |
Q |
| |
|
||| ||||| | ||| |||||| || ||||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||||| | |||||| ||| |
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|
| T |
3931387 |
tgcatttttttcttgctgcttcttcaccttatgtatgcttttctttatcagtttgggatcatcatggaccttaattcctgaagctctgtccattgctgct |
3931486 |
T |
|
| Q |
221 |
ttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3931487 |
ttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttcttc |
3931540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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