View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13492_low_16 (Length: 271)

Name: NF13492_low_16
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13492_low_16
NF13492_low_16
[»] chr1 (5 HSPs)
chr1 (13-253)||(51808358-51808599)
chr1 (13-121)||(51804409-51804516)
chr1 (13-52)||(51780640-51780679)
chr1 (208-253)||(51804639-51804684)
chr1 (220-252)||(51780779-51780811)
[»] scaffold0710 (1 HSPs)
scaffold0710 (13-64)||(7284-7335)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 51808358 - 51808599
Alignment:
Q  13 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51808358 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta 51808457  T
Q  113 agatataacatacaacatgcaacgaaattacagttgtta-ttgacctgagattgaccgttgaaaatagatgcacacggttcattcatatcgtatcagatg 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51808458 agatataacatacaacatgcaacgaaattacagttgttatttgacctgagattgaccgttgaaaatagatgcacatggttcattcatatcgtatcagatg 51808557  T
Q  212 caaactttgctgtcaacatattgttgataaagttgttgatgc 253  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  51808558 caaattttgctgtcaacatattgttgataaagttattgatgc 51808599  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 51804409 - 51804516
Alignment:
Q  13 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |  |||||||||| |||||||||||| |||| ||||||  | ||||||||||    
T  51804409 aatatcagaaaactttcaaatatatcgagcaggcaatttctcaagcatgcttagatgaatagaacaagtccactcttagagcataa-cataaagaattta 51804507  T
Q  113 agatataac 121  Q
    |||||||||    
T  51804508 agatataac 51804516  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 51780640 - 51780679
Alignment:
Q  13 aatatcagaaaactttcaaatatctcgagcaggcaatttc 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51780640 aatatcagaaaactttcaaatatctcgagcaggcaatttc 51780679  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 51804639 - 51804684
Alignment:
Q  208 gatgcaaactttgctgtcaacatattgttgataaagttgttgatgc 253  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||    
T  51804639 gatgtaaacttggctgtcaacatattgttgataaagttgttaatgc 51804684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 51780779 - 51780811
Alignment:
Q  220 gctgtcaacatattgttgataaagttgttgatg 252  Q
    |||||||||||||||||||||||||||| ||||    
T  51780779 gctgtcaacatattgttgataaagttgtggatg 51780811  T

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Target: scaffold0710 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 7284 - 7335
Alignment:
Q  13 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7284 aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagt 7335  T

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