View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13492_low_17 (Length: 270)

Name: NF13492_low_17
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13492_low_17
NF13492_low_17
[»] scaffold0189 (1 HSPs)
scaffold0189 (14-251)||(17624-17861)
[»] chr5 (25 HSPs)
chr5 (81-181)||(16172954-16173054)
chr5 (81-190)||(16457815-16457925)
chr5 (81-152)||(19373244-19373315)
chr5 (85-150)||(14656645-14656710)
chr5 (81-154)||(31669022-31669095)
chr5 (111-151)||(15485420-15485460)
chr5 (81-190)||(16773812-16773922)
chr5 (81-153)||(25627062-25627135)
chr5 (114-150)||(8780509-8780545)
chr5 (126-189)||(9948308-9948371)
chr5 (81-190)||(21589293-21589403)
chr5 (81-151)||(30109308-30109379)
chr5 (81-150)||(16436623-16436692)
chr5 (110-154)||(3315249-3315294)
chr5 (81-153)||(7918467-7918540)
chr5 (81-153)||(14285166-14285239)
chr5 (81-154)||(17405574-17405645)
chr5 (117-153)||(25979211-25979248)
chr5 (81-153)||(30883196-30883269)
chr5 (111-148)||(32340340-32340377)
chr5 (81-153)||(34984811-34984884)
chr5 (83-146)||(892479-892543)
chr5 (83-190)||(14495766-14495874)
chr5 (118-150)||(19883175-19883207)
chr5 (83-190)||(29692347-29692455)
[»] chr3 (40 HSPs)
chr3 (81-190)||(40268494-40268603)
chr3 (81-190)||(42799709-42799818)
chr3 (81-179)||(34844376-34844474)
chr3 (115-190)||(40777052-40777127)
chr3 (83-190)||(43303765-43303872)
chr3 (81-179)||(10682916-10683014)
chr3 (81-155)||(18316495-18316569)
chr3 (81-190)||(47454578-47454688)
chr3 (111-190)||(54990737-54990817)
chr3 (111-190)||(28834932-28835013)
chr3 (81-154)||(15034350-15034423)
chr3 (81-189)||(11092132-11092240)
chr3 (81-181)||(42430340-42430438)
chr3 (81-153)||(53863866-53863938)
chr3 (83-189)||(19154638-19154745)
chr3 (84-190)||(30311314-30311421)
chr3 (81-151)||(35623267-35623340)
chr3 (81-182)||(26871473-26871575)
chr3 (81-178)||(7207615-7207712)
chr3 (81-153)||(14186653-14186725)
chr3 (94-190)||(44069776-44069873)
chr3 (83-150)||(8170679-8170747)
chr3 (81-190)||(5499368-5499478)
chr3 (81-151)||(24478160-24478230)
chr3 (111-153)||(31714352-31714394)
chr3 (81-190)||(46518633-46518743)
chr3 (81-153)||(353155-353228)
chr3 (83-190)||(2667869-2667977)
chr3 (81-153)||(16354890-16354963)
chr3 (83-183)||(19716204-19716305)
chr3 (81-153)||(27093359-27093432)
chr3 (81-153)||(30510197-30510270)
chr3 (81-153)||(37788463-37788536)
chr3 (88-176)||(47236946-47237035)
chr3 (81-153)||(53412950-53413023)
chr3 (83-190)||(4844472-4844580)
chr3 (83-190)||(4870168-4870276)
chr3 (83-154)||(14339617-14339689)
chr3 (111-154)||(16900678-16900722)
chr3 (114-154)||(36660801-36660841)
[»] chr8 (26 HSPs)
chr8 (81-190)||(28783065-28783175)
chr8 (81-181)||(6530812-6530912)
chr8 (81-189)||(968367-968476)
chr8 (76-153)||(3624580-3624658)
chr8 (81-190)||(16852345-16852455)
chr8 (81-179)||(34778740-34778838)
chr8 (111-179)||(40136936-40137003)
chr8 (81-183)||(2203497-2203600)
chr8 (81-183)||(29858017-29858120)
chr8 (81-154)||(19703484-19703558)
chr8 (81-146)||(26688870-26688936)
chr8 (81-153)||(18540303-18540376)
chr8 (81-150)||(22268935-22269004)
chr8 (111-190)||(16317646-16317725)
chr8 (81-190)||(11793482-11793592)
chr8 (111-179)||(9126556-9126624)
chr8 (85-148)||(22779664-22779727)
chr8 (85-152)||(29206354-29206421)
chr8 (81-183)||(35287721-35287824)
chr8 (81-167)||(40591737-40591821)
chr8 (81-190)||(29431016-29431126)
chr8 (111-153)||(29855417-29855459)
chr8 (117-181)||(22193334-22193399)
chr8 (130-190)||(8059687-8059747)
chr8 (81-152)||(18897171-18897243)
chr8 (130-190)||(45053453-45053512)
[»] chr2 (32 HSPs)
chr2 (81-190)||(26482098-26482207)
chr2 (81-181)||(3697370-3697470)
chr2 (111-190)||(6099480-6099559)
chr2 (81-183)||(42327363-42327466)
chr2 (81-190)||(37480080-37480190)
chr2 (81-190)||(41908599-41908709)
chr2 (81-174)||(342400-342493)
chr2 (81-181)||(32106571-32106672)
chr2 (81-173)||(16525183-16525275)
chr2 (131-189)||(28966387-28966444)
chr2 (81-154)||(29503276-29503350)
chr2 (81-190)||(42602559-42602669)
chr2 (81-190)||(18825346-18825455)
chr2 (81-188)||(30359659-30359766)
chr2 (131-190)||(14780562-14780621)
chr2 (84-190)||(21213777-21213884)
chr2 (81-190)||(23052484-23052594)
chr2 (78-154)||(26176323-26176396)
chr2 (81-154)||(39714997-39715071)
chr2 (114-151)||(8192480-8192517)
chr2 (81-189)||(19016036-19016145)
chr2 (81-190)||(37755932-37756042)
chr2 (111-181)||(25384571-25384641)
chr2 (78-151)||(42860350-42860424)
chr2 (81-153)||(42922419-42922493)
chr2 (81-186)||(45672343-45672449)
chr2 (111-180)||(7250264-7250333)
chr2 (87-151)||(12086129-12086194)
chr2 (114-151)||(19605974-19606011)
chr2 (84-181)||(39273504-39273601)
chr2 (132-188)||(19244166-19244222)
chr2 (111-151)||(43963989-43964029)
[»] chr6 (21 HSPs)
chr6 (81-153)||(6691549-6691621)
chr6 (81-177)||(28028535-28028631)
chr6 (81-151)||(10338174-10338245)
chr6 (83-181)||(20864177-20864274)
chr6 (81-153)||(33549109-33549182)
chr6 (82-154)||(34444809-34444882)
chr6 (91-179)||(7484232-7484320)
chr6 (110-157)||(3433596-3433643)
chr6 (81-190)||(12188264-12188374)
chr6 (111-179)||(6383976-6384043)
chr6 (81-154)||(3869701-3869774)
chr6 (81-153)||(12234505-12234578)
chr6 (114-151)||(17149585-17149622)
chr6 (114-151)||(28741970-28742007)
chr6 (81-158)||(22664-22742)
chr6 (114-151)||(9208283-9208320)
chr6 (81-189)||(24333987-24334096)
chr6 (111-180)||(24762379-24762448)
chr6 (83-154)||(21418477-21418549)
chr6 (111-190)||(23242021-23242101)
chr6 (81-152)||(30127405-30127477)
[»] chr4 (38 HSPs)
chr4 (81-181)||(37980118-37980218)
chr4 (81-190)||(37109312-37109422)
chr4 (81-190)||(29195100-29195209)
chr4 (81-181)||(55256169-55256270)
chr4 (81-154)||(56409956-56410029)
chr4 (81-181)||(25414185-25414285)
chr4 (81-183)||(55427168-55427271)
chr4 (83-181)||(25434630-25434726)
chr4 (81-177)||(37455574-37455670)
chr4 (81-189)||(46295102-46295211)
chr4 (81-183)||(8325347-8325450)
chr4 (83-153)||(49576892-49576963)
chr4 (81-186)||(44865339-44865445)
chr4 (89-154)||(4686125-4686190)
chr4 (81-154)||(21344822-21344895)
chr4 (80-153)||(32475093-32475166)
chr4 (81-150)||(38206127-38206196)
chr4 (111-190)||(32992647-32992727)
chr4 (81-145)||(42281240-42281304)
chr4 (81-183)||(19238545-19238648)
chr4 (81-154)||(37720211-37720285)
chr4 (85-189)||(2184994-2185099)
chr4 (81-153)||(7949452-7949525)
chr4 (111-190)||(23377991-23378071)
chr4 (114-190)||(30938180-30938257)
chr4 (114-190)||(38838835-38838912)
chr4 (83-155)||(4088250-4088322)
chr4 (108-175)||(19220558-19220625)
chr4 (82-154)||(37492715-37492786)
chr4 (81-190)||(7292759-7292869)
chr4 (87-150)||(47183333-47183396)
chr4 (95-153)||(17701894-17701952)
chr4 (81-150)||(46545716-46545786)
chr4 (111-148)||(31141347-31141384)
chr4 (81-189)||(51250484-51250593)
chr4 (130-190)||(2732049-2732109)
chr4 (111-151)||(28929707-28929747)
chr4 (134-190)||(49262645-49262701)
[»] chr7 (34 HSPs)
chr7 (81-177)||(22760868-22760965)
chr7 (81-190)||(41487367-41487474)
chr7 (81-190)||(48125136-48125245)
chr7 (83-154)||(25956290-25956361)
chr7 (81-183)||(38374567-38374670)
chr7 (81-150)||(30579340-30579410)
chr7 (81-153)||(26459408-26459481)
chr7 (81-189)||(5273552-5273661)
chr7 (81-154)||(15905671-15905744)
chr7 (81-189)||(31835197-31835306)
chr7 (81-153)||(43215189-43215262)
chr7 (82-189)||(19553460-19553567)
chr7 (83-154)||(43590914-43590986)
chr7 (81-167)||(5579218-5579305)
chr7 (81-153)||(4566426-4566499)
chr7 (81-153)||(33869443-33869516)
chr7 (81-153)||(39631849-39631922)
chr7 (81-181)||(48039617-48039718)
chr7 (81-148)||(7801185-7801253)
chr7 (86-153)||(18847421-18847488)
chr7 (81-183)||(29538530-29538633)
chr7 (111-154)||(46279049-46279092)
chr7 (81-190)||(11720921-11721031)
chr7 (81-190)||(29385704-29385814)
chr7 (81-153)||(18363701-18363774)
chr7 (114-151)||(22696355-22696392)
chr7 (81-153)||(23552123-23552196)
chr7 (114-151)||(28647004-28647041)
chr7 (81-153)||(30442493-30442566)
chr7 (84-190)||(33460383-33460491)
chr7 (130-186)||(11700220-11700275)
chr7 (130-182)||(20468293-20468345)
chr7 (115-151)||(21574232-21574268)
chr7 (95-154)||(25132375-25132435)
[»] chr1 (46 HSPs)
chr1 (81-181)||(15581112-15581212)
chr1 (85-179)||(41470583-41470677)
chr1 (81-151)||(37046990-37047060)
chr1 (81-179)||(39012296-39012394)
chr1 (82-183)||(43445969-43446071)
chr1 (81-189)||(21694451-21694557)
chr1 (111-190)||(6127948-6128027)
chr1 (111-190)||(38939237-38939316)
chr1 (82-153)||(48400178-48400249)
chr1 (85-186)||(52029901-52030004)
chr1 (81-154)||(19528324-19528398)
chr1 (81-179)||(39714751-39714849)
chr1 (81-190)||(40257404-40257514)
chr1 (87-183)||(31605816-31605913)
chr1 (81-189)||(36371475-36371584)
chr1 (130-190)||(24019078-24019138)
chr1 (81-181)||(34228879-34228979)
chr1 (83-151)||(39964512-39964580)
chr1 (81-183)||(24730389-24730492)
chr1 (81-183)||(51814499-51814602)
chr1 (81-154)||(4824976-4825050)
chr1 (81-190)||(9165156-9165266)
chr1 (65-190)||(19940833-19940959)
chr1 (76-153)||(33700771-33700849)
chr1 (81-190)||(36428717-36428827)
chr1 (112-181)||(44486128-44486197)
chr1 (114-150)||(24217009-24217045)
chr1 (83-139)||(49101781-49101837)
chr1 (83-154)||(52116778-52116850)
chr1 (88-190)||(2799874-2799977)
chr1 (114-177)||(19480565-19480628)
chr1 (81-152)||(24857830-24857901)
chr1 (111-189)||(39966128-39966207)
chr1 (86-141)||(45232071-45232126)
chr1 (81-154)||(16169975-16170049)
chr1 (81-190)||(16893399-16893509)
chr1 (81-190)||(17424451-17424561)
chr1 (81-182)||(21547449-21547551)
chr1 (111-177)||(44417437-44417502)
chr1 (81-153)||(4566553-4566626)
chr1 (81-153)||(15786318-15786391)
chr1 (130-183)||(45266889-45266942)
chr1 (111-148)||(47360517-47360554)
chr1 (87-190)||(8177143-8177247)
chr1 (96-152)||(18928352-18928408)
chr1 (81-152)||(37400279-37400351)
[»] scaffold0258 (1 HSPs)
scaffold0258 (81-190)||(15284-15394)
[»] scaffold0194 (1 HSPs)
scaffold0194 (81-153)||(13044-13117)
[»] scaffold0299 (1 HSPs)
scaffold0299 (82-153)||(11534-11606)
[»] scaffold0172 (1 HSPs)
scaffold0172 (87-189)||(15739-15842)
[»] scaffold0002 (1 HSPs)
scaffold0002 (81-146)||(94976-95042)
[»] scaffold0517 (1 HSPs)
scaffold0517 (81-152)||(7725-7797)
[»] scaffold0291 (1 HSPs)
scaffold0291 (83-154)||(2467-2539)


Alignment Details
Target: scaffold0189 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 17861 - 17624
Alignment:
Q  14 gaacctgcacaatcattgaaggaggaatatgaactgaaggtcaagcacatgataacaataacagcctacttgggttggcctggtggtattggcgtaagac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17861 gaacctgcacaatcattgaaggaggaatatgaactgaaggtcaagcacatgataagaataacagcctacttgggttggcctggtggtattggcgtaagac 17762  T
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttcnnnnnnncatgataagaaaaaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  17761 cttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttcaaaaaaacatgataagaaaaaca 17662  T
Q  214 ataagtaatattacaagattagcaatccaaataccttc 251  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17661 ataagtaatattacaagattggcaatccaaataccttc 17624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 16173054 - 16172954
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||||||||| || ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||| ||||||||    
T  16173054 acttgggttggcctggtagtgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattctcctagttgccaatttcagtaggctagtt 16172955  T
Q  181 t 181  Q
    |    
T  16172954 t 16172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 16457815 - 16457925
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||| ||||||||||||||||||||| |  ||||||||||||| ||||| |||||||||||| |||| ||||||| ||  ||||||||  ||||||||||    
T  16457815 acttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagt 16457914  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  16457915 ttaggttcttc 16457925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 19373244 - 19373315
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 152  Q
    ||||| |||||||||||||| ||||| | |||||||||||||| || |||||||||| | ||||||||||||    
T  19373244 acttgagttggcctggtggtgttggcttgagaccttggagtgtgctactctcaaggttttaggttcgattct 19373315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 14656710 - 14656645
Alignment:
Q  85 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||||| |||||| || ||||| | |||||||||||| | ||||||||||||||||||||||||||    
T  14656710 gggttgacctggttgtgttggcttgagaccttggagtttgctcctctcaaggtctcaggttcgatt 14656645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 31669095 - 31669022
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||||||| ||| |||| ||||| |  ||||||||||| | ||||||||||||||| ||||||||||||||    
T  31669095 acttgggttggtctgatggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgattctcc 31669022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 15485460 - 15485420
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  15485460 gaccttggagtgtgctcctctcaaggtctcaggttcgattc 15485420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 16773812 - 16773922
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||| ||||| |||||||||||| | |  ||||| ||||||| |||||| || ||||||||||||||||||||   || ||||||||  |||||||| |    
T  16773812 acttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaat 16773911  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  16773912 ttagcttcttc 16773922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 25627062 - 25627135
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |   || | ||||||| |||||| |||||||||||||||||||||||    
T  25627062 acttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 25627135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 8780509 - 8780545
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8780509 cttggagtgtgctcctctcaaggtctcaggttcgatt 8780545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 9948308 - 9948371
Alignment:
Q  126 tcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttctt 189  Q
    |||||||||| |||||||||||||||||||||| ||  ||||| || || |||||||| |||||    
T  9948308 tcctctcaagatctcaggttcgattctcctcgacgctgatttcggtaggttagtttagcttctt 9948371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 21589293 - 21589403
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctc-gaggccaatttcagtgggctag 178  Q
    |||||||||||||||||||||||||| |  ||||| ||||| | || || ||| | |||||||||||||||| |||| |  ||||||||  |||||||||    
T  21589293 acttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattc-cctctggtgccaatttaggtgggctag 21589391  T
Q  179 tttagtttcttc 190  Q
    ||||| ||||||    
T  21589392 tttagcttcttc 21589403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 30109379 - 30109308
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 151  Q
    |||||||||||| ||||||||||||| |  ||||| ||||||| ||||| ||  ||||||||||||||||||    
T  30109379 acttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgattc 30109308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 16436623 - 16436692
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 150  Q
    |||||||||||||| ||||||||||| |  || |||||||||| ||||| |||||||||||| ||||||||    
T  16436623 acttgggttggcctagtggtattggcttggga-cttggagtgtgctcctcctcaaggtctcatgttcgatt 16436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 3315249 - 3315294
Alignment:
Q  110 agaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||    
T  3315249 agaccttggagtgcgctcctcctcaaggtctcaggttcgattctcc 3315294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 7918540 - 7918467
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |   |||| ||||||  ||||| |||||||||| |||||||||||||    
T  7918540 acttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcgattctc 7918467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 14285166 - 14285239
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||  |||| |||||| |   |||| ||||||| |||||| |||||||||||||||||||||||    
T  14285166 acttgggttggccgagtggaattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 14285239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 17405574 - 17405645
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||||||| |||||||| || || ||||||||| || ||| || |||||||||||||| ||||||||||||    
T  17405574 acttgggttggtctggtggtgttagcttaagacctttgaatgtgct-ctctcaaggtctca-gttcgattctcc 17405645  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 25979211 - 25979248
Alignment:
Q  117 ggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25979211 ggagtgttctcctcctcaaggtctcaggttcgattctc 25979248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 30883269 - 30883196
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    ||||||||||| || ||||||||||| |  ||||| ||||||| ||||| |||||||||||| |||| ||||||    
T  30883269 acttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctc 30883196  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 32340377 - 32340340
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcga 148  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  32340377 gaccttggagtgtgctcctctcaaggtcttaggttcga 32340340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 34984811 - 34984884
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    ||||||||||| || ||||||||||| |   |||| ||||||| |||||| ||||||||| |||||||||||||    
T  34984811 acttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctc 34984884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 892543 - 892479
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttc 146  Q
    |||||||||||| ||||||||||| |  |||||  |||||| ||||| |||||||||||||||||    
T  892543 ttgggttggcctagtggtattggcttgggacctcagagtgtactcctcctcaaggtctcaggttc 892479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 14495874 - 14495766
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||| |||||||||||| | |  || || ||||||| |||||| || ||||||||| || |||||||  ||| ||||||||   |||||||||||    
T  14495874 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctctccgatgccaatttagatgggctagttt 14495775  T
Q  182 agtttcttc 190  Q
    || ||||||    
T  14495774 agcttcttc 14495766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 19883207 - 19883175
Alignment:
Q  118 gagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||||| ||||||||||||||||||||||||||    
T  19883207 gagtgtgctcctctcaaggtctcaggttcgatt 19883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 29692455 - 29692347
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||| |||||||||||||  |  || || ||||||| |||||| |||| ||||||||||  ||||||  ||| ||||||||  |||| ||| |||    
T  29692455 ttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctcaaagtctcaggtttaattctctccgatgccaatttgggtggactaattt 29692356  T
Q  182 agtttcttc 190  Q
    |||||||||    
T  29692355 agtttcttc 29692347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 40268494 - 40268603
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||| |||||||||| ||||| |  ||||||||||||  ||||||| |||||||||||||||||||||| ||| ||||||||| ||||| |||||    
T  40268494 acttgggtttgcctggtggtgttggcttgggaccttggagtgggctcctcttaaggtctcaggttcgattctccccgatgccaatttcggtgggttagtt 40268593  T
Q  181 tagtttcttc 190  Q
    ||| ||||||    
T  40268594 tagcttcttc 40268603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 42799818 - 42799709
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| |||||||||||||||||||||||| |||||| ||  ||||||||  |||||| |||    
T  42799818 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgactctcctggattccaatttcgatgggctggtt 42799719  T
Q  181 tagtttcttc 190  Q
    ||| ||||||    
T  42799718 tagcttcttc 42799709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 34844376 - 34844474
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagt 179  Q
    |||||||||| ||||||| | ||||| | |||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||| |||| |||||    
T  34844376 acttgggttgccctggtgttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattc-cctccagagccaatttcggtggactagt 34844474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 40777052 - 40777127
Alignment:
Q  115 ttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| || ||||||||| |||||||||||||||||||||    
T  40777052 ttggagtgtgctcctctcaaggtctcaggtttgattct-ctctagtgccaatttcggtgggctagtttagtttcttc 40777127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 43303765 - 43303872
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 182  Q
    ||||||||||||||||||  |||| | ||||||||||| || |||||||| |||||||||||| |||||||| ||  || ||| || ||||||||||||     
T  43303765 ttgggttggcctggtggtgatggcttgagaccttggagcgtgctcctctccaggtctcaggtttgattctccccggtgctaatatcggtgggctagtttg 43303864  T
Q  183 gtttcttc 190  Q
    | ||||||    
T  43303865 gcttcttc 43303872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 10683014 - 10682916
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||  || ||||||||||| | |||||||||||||| || ||||||| ||||||||||| |||||||| |   |||||||||| ||||||||    
T  10683014 acttgggttgatctagtggtattggcttgagaccttggagtgtgcttctctcaaagtctcaggttcaattctccttggtcccaatttcagcgggctagt 10682916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 18316569 - 18316495
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcct 155  Q
    ||||||||||| ||||||||  |||| |  ||||||||||||| ||||||||||||||| |||||||||||||||    
T  18316569 acttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgattctcct 18316495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 47454688 - 47454578
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||  || ||||||||||| | ||| |||||||||| |||||| || ||||||||||||||||||||| | | ||||||||  ||||| ||||    
T  47454688 acttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagt 47454589  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  47454588 ttagcttcttc 47454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 54990737 - 54990817
Alignment:
Q  111 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||| | ||||||  |||||||| ||||| ||||||    
T  54990737 gaccttggagcgtgctcctcctcaaggtctcaggttcgattctcctcgatggcaatttaggtgggctaatttagcttcttc 54990817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 28835013 - 28834932
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattct--cctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||||||||||  |||||||||||||||| |||||| |||  || ||  |||||||||||||||||||||| ||||||||    
T  28835013 gaccttggagtgtcttcctctcaaggtctcaagttcgaatctttccccggtgccaatttcagtgggctagttttgtttcttc 28834932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 15034350 - 15034423
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||||| ||| | |  |||||||||| ||  ||||||||||||||||||||| |||||||    
T  15034350 acttgggttggcctggtggtgttgccttgggaccttggagggtgatcctctcaaggtctcaggttcaattctcc 15034423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 11092240 - 11092132
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||| ||||| ||||| |  ||||||| ||||| || ||||||||||||||  |||||||||||  |  || |||||| ||||| |||||    
T  11092240 acttgggttggcctagtggtgttggcttgggaccttgtagtgtgctactctcaaggtctcaacttcgattctccctggtgctaatttcggtgggttagtt 11092141  T
Q  181 tagtttctt 189  Q
    | |||||||    
T  11092140 tggtttctt 11092132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 42430340 - 42430438
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||| ||||||||||| | |  || |||||||||| ||||||||||||||| | |||||||||||| | | ||||||||| | |||||||||    
T  42430340 acttgggttggc-tggtggtattgacttgggatcttggagtgtgctcctctcaaggtctta-gttcgattctccccaatgccaatttcggggggctagtt 42430437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 53863938 - 53863866
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    |||||||||| ||||||| | ||||| |  ||||||||||||| ||||||||||||||| |||||| ||||||    
T  53863938 acttgggttgtcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctc 53863866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 19154638 - 19154745
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    |||||||||||| || |||||||| | || |||  |||||| |||||| | ||||||||||||||||||||| | || | ||||||  ||||| ||||||    
T  19154638 ttgggttggcctagttgtattggcttgaggcctgagagtgtgctcctcctaaaggtctcaggttcgattctctttgatgtcaatttgggtgggttagttt 19154737  T
Q  182 agtttctt 189  Q
    ||||||||    
T  19154738 agtttctt 19154745  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 30311314 - 30311421
Alignment:
Q  84 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 182  Q
    ||||||||||| ||||||| ||| |  || || ||||||| |||||| ||||||||||||||||||||||| | |  |||||||| || ||| |||||||    
T  30311314 tgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctctttggtgccaatttgagggggttagttta 30311413  T
Q  183 gtttcttc 190  Q
    | ||||||    
T  30311414 gcttcttc 30311421  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 35623340 - 35623267
Alignment:
Q  81 acttgggttggcctggt---ggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||||||||||   ||| ||||| |  ||||||||||||| ||||||||||||||||| |||||||||    
T  35623340 acttgggttggcctggttgtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcgattc 35623267  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 26871575 - 26871473
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||| ||||| |  ||||||||||| ||||||| ||||| |||| ||||| |||||| | | | ||||||||  |||||||| |    
T  26871575 acttgggttggcctggtggtgttggcttgggaccttggagttttctcctcctcaaagtctgaggtttgattctacccaatgccaatttgggtgggctaat 26871476  T
Q  180 tta 182  Q
    |||    
T  26871475 tta 26871473  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 7207615 - 7207712
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctag 178  Q
    |||||||||||| ||||||| ||| | |  ||||||| || ||  |||||| ||||| ||||||||||||||||||   |||||||||||| ||||||    
T  7207615 acttgggttggcttggtggtgttgccttgggaccttgaagggtgatcctcttaaggtttcaggttcgattctcctcagtgccaatttcagtaggctag 7207712  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 14186653 - 14186725
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||| | |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  14186653 acttgggttggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaaggtctcaggttcgattctc 14186725  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 44069776 - 44069873
Alignment:
Q  94 tggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||| ||||| | ||| |||||||||| |||||| ||||||||||||||| ||||||   ||  ||||||||  |||||||||||||| ||||||    
T  44069776 tggtggtgttggcttgagatcttggagtgtgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttc 44069873  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 8170679 - 8170747
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 150  Q
    |||||||||||| ||||||||||| | | || | ||||||| ||||| |||||||||||||||||||||    
T  8170679 ttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaaggtctcaggttcgatt 8170747  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 5499478 - 5499368
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||||||| | | ||| ||  |||||| ||||| || ||||||| |||||| ||||||| ||  |||||||||| | | ||| |    
T  5499478 acttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctccccggtgccaatttcaatagactaat 5499379  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  5499378 ttagcttcttc 5499368  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 24478160 - 24478230
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||||  ||||||||||||| |   || ||| |||||||||||||||||||||| ||||| ||||    
T  24478160 acttgggttggtttggtggtattggcttggtactttgaagtgttctcctctcaaggtctcgggttcaattc 24478230  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 31714352 - 31714394
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||    
T  31714352 gaccttgaagtgtgctcctctcaaggtctcaagttcgattctc 31714394  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 46518633 - 46518743
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||| | ||||||||||| |  || || ||||||| ||||| |||||||| ||||||| |||||||   || |||||||| || ||| ||||    
T  46518633 acttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctctctgatgccaatttgagggggttagt 46518732  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  46518733 ttagcttcttc 46518743  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 353228 - 353155
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||||||||  |||||    ||||||| ||| |||| ||| |||||||||||||||||||||||    
T  353228 acttgggttggcctggtggcgttggctagggaccttgtagtattcttctcctcaaggtctcaggttcgattctc 353155  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 2667869 - 2667977
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagtt 180  Q
    |||||||||||||||||||||||| |  || || ||||||| ||| | ||| ||||||||||||||||| | ||| || | ||||||  |||||||||||    
T  2667869 ttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattat-ctctagtgtcaatttaggtgggctagtt 2667967  T
Q  181 tagtttcttc 190  Q
    ||| ||||||    
T  2667968 tagcttcttc 2667977  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 16354963 - 16354890
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |   ||||  |||||| ||||| |||| |||||||||||||||||||    
T  16354963 acttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttcgattctc 16354890  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 19716204 - 19716305
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    |||||||| | ||||||| ||||| |  |||| |||||||| |||||| |||||||||| ||||||||||||| ||  | ||||||  |||||||| |||    
T  19716204 ttgggttgacatggtggtgttggcttgggaccatggagtgtgctcctcctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaattt 19716303  T
Q  182 ag 183  Q
    ||    
T  19716304 ag 19716305  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 27093432 - 27093359
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |   || | ||||||| ||||| |||||||||||||||| |||||||    
T  27093432 acttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtttgattctc 27093359  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 30510270 - 30510197
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||||||| |||||||||| |||| |  ||||| ||||| | ||||| ||| ||||||||||||||||||||    
T  30510270 acttgggttgtcctggtggtactggcttgggacctaggagtatgctccttctcgaggtctcaggttcgattctc 30510197  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 37788536 - 37788463
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||  ||||||||| | |   |||| ||||||| |||||| |||||||||||||||||||||||    
T  37788536 acttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctc 37788463  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 47237035 - 47236946
Alignment:
Q  88 ttggcctggtggtattggcgtaagaccttggagtgttctcctct-caaggtctcaggttcgattctcctcgaggccaatttcagtgggct 176  Q
    ||||||||||||||||||  |  ||||  ||||||| ||||||| |||||||||| |||||||||||| ||  ||||||||  |||||||    
T  47237035 ttggcctggtggtattggtttgggacccgggagtgtgctcctcttcaaggtctcatgttcgattctccccggtgccaatttgggtgggct 47236946  T

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Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 53412950 - 53413023
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    ||||||||||| || ||||||||||| |   |||| ||||||| |||||| |||||||||||||||| ||||||    
T  53412950 acttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttcaattctc 53413023  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 4844580 - 4844472
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||| |||||||||||| | |  || || ||||||| ||||| ||| |||||||||| |||||||||  ||  ||||||||  |||||||| |||    
T  4844580 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaattt 4844481  T
Q  182 agtttcttc 190  Q
    || ||||||    
T  4844480 agcttcttc 4844472  T

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Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 4870276 - 4870168
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||| |||||||||||| | |  || || ||||||| ||||| ||| |||||||||| |||||||||  ||  ||||||||  |||||||| |||    
T  4870276 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaattt 4870177  T
Q  182 agtttcttc 190  Q
    || ||||||    
T  4870176 agcttcttc 4870168  T

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Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 14339617 - 14339689
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    |||| ||||||||||||||||||| |  ||  | ||||||| |||||| |||| |||||||||||||||||||    
T  14339617 ttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttcgattctcc 14339689  T

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Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 16900722 - 16900678
Alignment:
Q  111 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||    
T  16900722 gaccttggagtgtgctcctcgtcaaggtctcatgttcgattctcc 16900678  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 36660801 - 36660841
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  36660801 cttggagtttgctcctctcaaggtctcaggttcaattctcc 36660841  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 28783065 - 28783175
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||| ||||||||||||| | |||||| ||||||| |||||| ||||||||||| |||||||||||||||  ||||||||  |||||||| |    
T  28783065 acttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaat 28783164  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  28783165 ttagcttcttc 28783175  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 6530812 - 6530912
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||||||||| ||||| |  ||||| ||||||| |||||||||| ||||||||||||||||||| ||  |||||| || |||| ||||||    
T  6530812 acttgggttggcctggtggtgttggcttgggacctaggagtgtgctcctctcaatgtctcaggttcgattctccccggtgccaatatcggtggactagtt 6530911  T
Q  181 t 181  Q
    |    
T  6530912 t 6530912  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 968367 - 968476
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||| |||||||||||||||||||| |  ||||| ||||||| |||||| || ||||||||||||||||||||  ||| ||||||||  |||||||| |    
T  968367 acttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaat 968466  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  968467 ttagcttctt 968476  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 3624580 - 3624658
Alignment:
Q  76 agcctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||| |||||||||||||| ||||||||||| |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  3624580 agcccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctc 3624658  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 16852345 - 16852455
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||| ||||||||||||||||||||||    ||||||||  |||||||| |    
T  16852345 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctatt 16852444  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  16852445 ttagcttcttc 16852455  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 34778740 - 34778838
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||||||||||| ||| |||| ||| ||  ||||||||| ||||||||||    
T  34778740 acttgggtttgcctggtggtgttggcttgagaccttgcagtgtgctcctttcaaggtctcaagtttgattttccacggtgccaatttcggtgggctagt 34778838  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 40137003 - 40136936
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||  ||||||||| ||||||||||    
T  40137003 gaccttggagtgtgctcctctcaaggtctcaggtttgattctcc-cggtgccaatttcggtgggctagt 40136936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 2203497 - 2203600
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| |||||||||||||| || ||||||| ||  ||||||||  |||||||| |    
T  2203497 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaat 2203596  T
Q  180 ttag 183  Q
    ||||    
T  2203597 ttag 2203600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 29858120 - 29858017
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||| ||||||||||||||||||| |  ||||  ||||||| |||||| || |||||||||||||||||| |||||  ||||||||  |||||||| |    
T  29858120 acttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcgattcccctcggtgccaatttaggtgggctaat 29858021  T
Q  180 ttag 183  Q
    ||||    
T  29858020 ttag 29858017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 19703558 - 19703484
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||| ||||||||||| |  |||||  |||||| |||||| ||||||||||||||||||||||||    
T  19703558 acttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctcc 19703484  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 26688870 - 26688936
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttc 146  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||||| |||||||||||||||||    
T  26688870 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 18540303 - 18540376
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| || ||| |||||||||||||||||||||||    
T  18540303 acttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctc 18540376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 22269004 - 22268935
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||| ||||||||||||| ||| ||||    
T  22269004 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcttctcaaggtctcaagtttgatt 22268935  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 16317646 - 16317725
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||| |||||| |||||||||  |||||| |||||||||||   |  |||||||||||||||||||||||| ||||||    
T  16317646 gaccttagagtgtgctcctctcagcgtctcatgttcgattctctctggtgccaatttcagtgggctagtttagcttcttc 16317725  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 11793592 - 11793482
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||| || ||||| || || |  ||||||||||||| |||||| ||||||||| ||||| |||||| | ||  ||||||||  ||||||||||    
T  11793592 acttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgggctagt 11793493  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  11793492 ttagcttcttc 11793482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 9126624 - 9126556
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||| |||||||||||| |||| ||||||||| | ||   |||||||||| |||||||||    
T  9126624 gaccttggagtgtgctcctctcaaggactcaagttcgattcccatctgtgccaatttcattgggctagt 9126556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 22779664 - 22779727
Alignment:
Q  85 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcga 148  Q
    ||||| ||||||||| || ||| |  ||||||||| ||| ||||||||||||||||||||||||    
T  22779664 gggttagcctggtggcataggcttgggaccttggaatgtgctcctctcaaggtctcaggttcga 22779727  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 29206354 - 29206421
Alignment:
Q  85 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 152  Q
    |||||||||||||||| | ||| |   ||||||| |||| ||||||||||||| ||||||||||||||    
T  29206354 gggttggcctggtggtgtgggcttggtaccttggggtgtgctcctctcaaggtgtcaggttcgattct 29206421  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 35287721 - 35287824
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||| ||||||||||| ||||| | |||  ||||||||| ||||| |||||||| ||| |||||||||||  ||  ||||||||  |||| |||||    
T  35287721 acttgggtaggcctggtggtgttggcttgagattttggagtgtgctcctcctcaaggtatcatgttcgattctctccggtgccaatttgggtggactagt 35287820  T
Q  180 ttag 183  Q
    ||||    
T  35287821 ttag 35287824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 40591737 - 40591821
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaattt 167  Q
    ||||| |||||||||||||||||||| |  ||| | ||||||| |||  ||||| |||||||||| ||||||| |||| ||||||||    
T  40591737 acttgtgttggcctggtggtattggcttcggacttgggagtgtgctc--ctcaaagtctcaggtttgattctcttcgatgccaattt 40591821  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 29431016 - 29431126
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||| ||||||||| |  ||| | ||||||| ||||| ||  ||| |||||||||||||||| | |  || ||||| ||||||||| |    
T  29431016 acttgggttggcctggcggtattggcttgggacttgggagtgtgctcctccttgaggcctcaggttcgattctctttggtgctaatttgagtgggctaat 29431115  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  29431116 ttagcttcttc 29431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 29855459 - 29855417
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||    
T  29855459 gaccttgtagtgtgctcctcttaaggtctcaggttcgattctc 29855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 22193399 - 22193334
Alignment:
Q  117 ggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||| |||||| ||||||||| |||||||||||||  ||| | |||||| |||||||||||||    
T  22193399 ggagtgtgctcctcctcaaggtcttaggttcgattctctccgaaggcaatttaagtgggctagttt 22193334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 8059687 - 8059747
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||||||| |||||||  || | |||||| |||| |||||||||| ||||||    
T  8059687 ctcaaggtctcaggttccattctccctgatgtcaatttgagtgagctagtttagcttcttc 8059747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 18897171 - 18897243
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattct 152  Q
    |||||||||||||| ||||| ||||  |  |||||| |||||| |||||| ||||||||||| ||||||||||    
T  18897171 acttgggttggcctagtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattct 18897243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 45053512 - 45053453
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||| ||||||| |||||||  |||||||  |||||||||||||| ||||||    
T  45053512 ctcaaggtctcag-ttcgattatcctcgataccaatttaggtgggctagtttagattcttc 45053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 26482098 - 26482207
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||| |||||||||| |||| ||||| |  ||||| ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||| ||    
T  26482098 acttaggttggcctgatggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaggttcgattctcctcagtgccaatttcagtgggctaatt 26482197  T
Q  181 tagtttcttc 190  Q
    | | ||||||    
T  26482198 tggcttcttc 26482207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 3697470 - 3697370
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||| ||| |||||||||| |  |||||||||| || |||||||||||||||| ||||||||||||||||  ||||||||| | ||| |||||    
T  3697470 acttgggttggtctgatggtattggcttgggaccttggagagtgctcctctcaaggtctctggttcgattctcctcggtgccaatttcggcgggttagtt 3697371  T
Q  181 t 181  Q
    |    
T  3697370 t 3697370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 6099559 - 6099480
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||  |||||| || |||||||||||| | ||||||    
T  6099559 gaccttggagtgtgctcctctcaaggtctcaggttcgattctccccgctgccaatatcggtgggctagtttggcttcttc 6099480  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 42327466 - 42327363
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||  |||||||| |    
T  42327466 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaat 42327367  T
Q  180 ttag 183  Q
    ||||    
T  42327366 ttag 42327363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 37480080 - 37480190
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||||||||| |  |||||  |||||| |||||| |||||||||||||||||||||||| ||   |||||||  |||||||| |    
T  37480080 acttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaat 37480179  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  37480180 ttagcttcttc 37480190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 41908709 - 41908599
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||| | ||  | |||||||||||||| |||||| ||||||||||| |||||||| ||| ||  ||||||||  ||||||||||    
T  41908709 acttgggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagt 41908610  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  41908609 ttagcttcttc 41908599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 342400 - 342493
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtggg 174  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||| || |||||||||| |||| ||||||||||  ||||||||| |||||    
T  342400 acttgggttggcctggtggtgttggcttgtgaccttggagtgtactcatcgcaaggtctcaagttcaattctcctcggtgccaatttcggtggg 342493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 32106571 - 32106672
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||| ||| | |  ||||||||||||| |||| |||||||||||  || |||||||||  ||  ||||||||||||||||||||    
T  32106571 acttgggttggcctggtggtgttgacttgggaccttggagtgtgctccctctcaaggtcttgggctcgattctctccggtgccaatttcagtgggctagt 32106670  T
Q  180 tt 181  Q
    ||    
T  32106671 tt 32106672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 16525183 - 16525275
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgg 173  Q
    ||||||||||||||| |||| ||||| |  ||| ||||||||| |  ||||||||||||||||||||||||||| ||  ||||||||| ||||    
T  16525183 acttgggttggcctgatggtgttggcttgggacgttggagtgtgcgactctcaaggtctcaggttcgattctccccggtgccaatttcggtgg 16525275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 28966387 - 28966444
Alignment:
Q  131 tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttctt 189  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||    
T  28966387 tcaaggtctcaggttcgattctcc-cgttgccaatttcagtgggctagtttagcttctt 28966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 29503276 - 29503350
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||| ||||||||||  |  ||||| ||||||| |||||| ||||||||||||||||||||||||    
T  29503276 acttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 29503350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 42602559 - 42602669
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| |||| ||||||||||| ||||| |||||||  ||  ||||||||  |||||||| |    
T  42602559 acttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaat 42602658  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  42602659 ttagcttcttc 42602669  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 18825346 - 18825455
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||  ||||||||| ||||| |  ||||| ||||||| ||||||||||||||||| ||| |||| ||| ||  ||||||||| || ||||||||    
T  18825346 acttgggtttacctggtggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaagtttgattttccccggtgccaatttcggtaggctagtt 18825445  T
Q  181 tagtttcttc 190  Q
     || ||||||    
T  18825446 gagcttcttc 18825455  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 30359659 - 30359766
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||| ||||||| ||||| |  ||||||||||||| ||||| ||||||||||||  ||||||||||| |   ||||||||  ||||||||||    
T  30359659 acttgggttggcttggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctca-tttcgattctccccagtgccaatttgggtgggctagt 30359757  T
Q  180 ttagtttct 188  Q
    |||| ||||    
T  30359758 ttagcttct 30359766  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 14780562 - 14780621
Alignment:
Q  131 tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||||||||| |||| ||| |||||||| ||||||||| ||||| ||||||    
T  14780562 tcaaggtctcaggttcgatcctccccgatgccaatttgagtgggctaatttagcttcttc 14780621  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 21213777 - 21213884
Alignment:
Q  84 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 182  Q
    |||||||| |||||||||||||| |  ||||| |||||||  ||||| |  ||||||||||||||||||||| ||  ||||||||  ||||||||||||     
T  21213777 tgggttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggctagtttt 21213876  T
Q  183 gtttcttc 190  Q
    | ||||||    
T  21213877 gcttcttc 21213884  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 23052594 - 23052484
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctag 178  Q
    |||| ||||||||||||||||||||| |  ||| | ||||||| || ||| |||||||||||||||||||||||| | || |||| |||  ||||||||     
T  23052594 acttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctcc-ctagtgccagtttgggtgggctaa 23052496  T
Q  179 tttagtttcttc 190  Q
    ||||||||||||    
T  23052495 tttagtttcttc 23052484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 26176396 - 26176323
Alignment:
Q  78 cctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||||||   ||| | |  |||||||| |||| |||||||||||||||||| |||||||||||    
T  26176396 cctacttgggttggcctggtg---ttgacttgggaccttggggtgtgctcctctcaaggtctcagattcgattctcc 26176323  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 39714997 - 39715071
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||| ||||||||||| | |  ||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  39714997 acttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctcc 39715071  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 8192517 - 8192480
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8192517 cttggagtgtgctcctctcaaggtctcaggttcgattc 8192480  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 19016036 - 19016145
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||| ||| |||||||||| | |||| | ||||||| ||||| ||| |||||||| ||| |||||||| ||  |||||||| ||| ||||| |    
T  19016036 acttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgattctccccggtgccaatttaagtaggctaat 19016135  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  19016136 ttagcttctt 19016145  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 37756042 - 37755932
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctc-gaggccaatttcagtgggctag 178  Q
    |||||||||||| ||||||||||||| |  ||||| ||| ||| ||||| ||| |||||||| |||||| || |||| || |||||||| |||||||||     
T  37756042 acttgggttggcttggtggtattggcttgggacctgggaatgtgctcctactcgaggtctcaagttcgactc-cctctgatgccaatttgagtgggctaa 37755944  T
Q  179 tttagtttcttc 190  Q
    ||||| ||||||    
T  37755943 tttagcttcttc 37755932  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 25384571 - 25384641
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||||||| ||||||||| |||||| ||||||||| | ||||  ||||||||  ||||| ||||||    
T  25384571 gaccttggagtgtgctcctctcagggtctcgggttcgattatgctcggtgccaattttggtgggttagttt 25384641  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 42860350 - 42860424
Alignment:
Q  78 cctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 151  Q
    |||||||| |||||||||||| ||||| | | |||||| ||||||| ||||| ||| |||||||| |||||||||    
T  42860350 cctacttgagttggcctggtgatattgacttgagacctgggagtgtgctcctcctcgaggtctcaagttcgattc 42860424  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 42922419 - 42922493
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctc-aaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |   |||| ||||||| ||||| ||| |||||||||||||||||||||    
T  42922419 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaaggtctcaggttcgattctc 42922493  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 45672449 - 45672343
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||| ||| | | |||||||||||| |  ||||| || ||||||||||||| |||||||||   | ||||||  ||||| ||||    
T  45672449 acttgggttggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcaggttcaattctcctccgtgtcaatttgggtgggttagt 45672350  T
Q  180 ttagttt 186  Q
    |||||||    
T  45672349 ttagttt 45672343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 7250264 - 7250333
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||||| ||||||||||| ||||| ||| |||||  | ||  ||||||||| |||||||||||    
T  7250264 gaccttggagtgtgctcctctcaagatctcaagtttgattcctcccggagccaatttcggtgggctagtt 7250333  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 12086194 - 12086129
Alignment:
Q  87 gttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 151  Q
    |||||||||||||||||||| |  ||||| | ||||| ||||| ||||||||||| ||||||||||    
T  12086194 gttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggttcgattc 12086129  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 19606011 - 19605974
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||  |||||||||||||||||||||||||||    
T  19606011 cttggagtgcgctcctctcaaggtctcaggttcgattc 19605974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 39273504 - 39273601
Alignment:
Q  84 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||||||||| | ||||| | ||| ||||||||||  | ||| ||||||||||| ||  ||||||| ||| || |||||| ||||| ||||||    
T  39273504 tgggttggcctggtgttgttggcttcagatcttggagtgtatttctcccaaggtctcagttttaattctccccgatgcgaatttcggtgggttagttt 39273601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 19244166 - 19244222
Alignment:
Q  132 caaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttct 188  Q
    ||||||||||||||||||||||   |  |||||||| ||||||||| ||||||||||    
T  19244166 caaggtctcaggttcgattctctctggtgccaatttgagtgggctaatttagtttct 19244222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 43964029 - 43963989
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  43964029 gaccttggagtgtgctcctctcaaggtctcatgtttgattc 43963989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 6691621 - 6691549
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||||||||| ||| | | |||||||||||||| |||||||||||||||||||||||||||||    
T  6691621 acttgggttggcctggtggtgttgactttagaccttggagtgtgctcctctcaaggtctcaggttcgattctc 6691549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 28028535 - 28028631
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 177  Q
    |||||||||||||||||||| ||| | |  |||||| |||||  ||||||||||||||||| ||||||||||||  || |||||||||  |||||||    
T  28028535 acttgggttggcctggtggtgttgacttgggacctttgagtgagctcctctcaaggtctcatgttcgattctccctgatgccaatttcgatgggcta 28028631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 10338245 - 10338174
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 151  Q
    |||||||||||| ||||||||||||| |  ||||| ||||||| ||||| ||||||||||||||||||||||    
T  10338245 acttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcgattc 10338174  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 20864274 - 20864177
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||| |||||||||| ||||| || ||||||||||||| |||||||||| |||| | |||||||| ||  ||  | ||||||||||||||||||||    
T  20864274 ttgggttagcctggtggtgttggcttaggaccttggagtgtgctcctctcaatgtctta-gttcgattatctccggtgtcaatttcagtgggctagttt 20864177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 33549109 - 33549182
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    ||||||||||| |||||||||||||| |  ||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  33549109 acttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 33549182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 34444809 - 34444882
Alignment:
Q  82 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    ||||||||||||||||||||||| | |  |||||| |||||| ||||| | |||||||||||||||||||||||    
T  34444809 cttgggttggcctggtggtattgacttgggaccttagagtgtgctcctccccaaggtctcaggttcgattctcc 34444882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 7484320 - 7484232
Alignment:
Q  91 gcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||| | |||||||| || || |||| |||||||||||| ||| ||||| || ||  ||||||||| ||||||||||    
T  7484320 gcctggtggtattggcttgagaccttgaagagtgctccgctcaaggtctcacgttagattccccccggtgccaatttcggtgggctagt 7484232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 3433643 - 3433596
Alignment:
Q  110 agaccttggagtgttctcctctcaaggtctcaggttcgattctcctcg 157  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||    
T  3433643 agaccttggagtttgctcctctcaaggtctcaggttcgattttcctcg 3433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 12188374 - 12188264
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctag 178  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| |||||||| ||| |||||||||| ||| || |||||||| || ||| |||    
T  12188374 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattct-ctctagtgccaatttgagggggttag 12188276  T
Q  179 tttagtttcttc 190  Q
    ||||| ||||||    
T  12188275 tttagcttcttc 12188264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 6384043 - 6383976
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagt 179  Q
    ||||||||||||| |||||||||||||||||||||| ||   ||||| | ||||||||||||||||||||    
T  6384043 gaccttggagtgtgctcctctcaaggtctcaggttcaat--ccctcgggtgccaatttcagtgggctagt 6383976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 3869701 - 3869774
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||||||||||| |||| ||||| | ||| ||| |||||| || || ||||||||||| ||||||||||||    
T  3869701 acttgggttggcctgatggtgttggcttgagatcttcgagtgtgcttctatcaaggtctcatgttcgattctcc 3869774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 12234578 - 12234505
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctc 153  Q
    |||| ||||||||||||||||||| | |  ||||| ||||||| |||| |||| ||||||||||||||||||||    
T  12234578 acttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctc 12234505  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 17149622 - 17149585
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||| |||||||||||||||||||||||||||    
T  17149622 cttggagtgtgctcctctcaaggtctcaggttcgattc 17149585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 28742007 - 28741970
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||| |||||||||||||||||||||||||||    
T  28742007 cttggagtgtgctcctctcaaggtctcaggttcgattc 28741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 22742 - 22664
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtct-caggttcgattctcctcga 158  Q
    ||||||||||| || ||||| ||||| |  ||||||||||||| ||| ||||||||||| || |||| |||||||||||    
T  22742 acttgggttgggctagtggttttggcttgggaccttggagtgtgctcttctcaaggtctccatgttcaattctcctcga 22664  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 9208283 - 9208320
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||| | |||||||||||||||||||||||||||    
T  9208283 cttggagtttgctcctctcaaggtctcaggttcgattc 9208320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 24334096 - 24333987
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||| | |||| ||||| |  ||| ||| ||| | |||||| |||||||||||||||| ||||||  ||  ||||||||  ||||||||||    
T  24334096 acttgggttggccggatggtgttggcttgggacattgcagtatgctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagt 24333997  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  24333996 ttagcttctt 24333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 24762448 - 24762379
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||| |||| ||||||| ||||||| ||||||||| |||| ||  ||||||||  |||||||||||    
T  24762448 gaccttggtgtgtgctcctcttaaggtcttaggttcgatcctccccggtgccaattttggtgggctagtt 24762379  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 21418477 - 21418549
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||||||||| |  ||| | ||||||| ||||| ||| | |||||| ||||||||||||    
T  21418477 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctccatgtctcaagttcgattctcc 21418549  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 23242021 - 23242101
Alignment:
Q  111 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||| ||||||| |||||| |||||||| ||||| || |||||| ||  ||||||||  |||||||||||||| ||||||    
T  23242021 gacctcggagtgtactcctcctcaaggtcacaggtccggttctccccggtgccaatttgggtgggctagtttagcttcttc 23242101  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 30127405 - 30127477
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattct 152  Q
    ||||||||||| |||||||||||||| |  |  || ||||||| |||||| || |||||||||||||||||||    
T  30127405 acttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctcaggttcgattct 30127477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 37980218 - 37980118
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||||||| | ||||| |  ||||||||||||| |||||||||||||||||||||||||||||| |   | ||||||||| |||||||||    
T  37980218 acttgggttggcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctccccagtgtcaatttcagcgggctagtt 37980119  T
Q  181 t 181  Q
    |    
T  37980118 t 37980118  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 37109422 - 37109312
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||||||||||||||||||||||||   |  |||||||| || ||| ||||    
T  37109422 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagt 37109323  T
Q  180 ttagtttcttc 190  Q
    |||||||||||    
T  37109322 ttagtttcttc 37109312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 29195100 - 29195209
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| |||||||||||||| || |||||||||||    | ||||||||  || ||||||||    
T  29195100 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattttggttggctagtt 29195199  T
Q  181 tagtttcttc 190  Q
    ||| ||||||    
T  29195200 tagcttcttc 29195209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 55256270 - 55256169
Alignment:
Q  81 acttgggttgg-cctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||| ||||||||||||||| |  ||| ||||||||| || | ||||||| ||||||||||||||||||||  ||||||||  ||||||||||    
T  55256270 acttgggttgggcctggtggtattggcttgtgacattggagtgtgcttccctcaaggcctcaggttcgattctcctcggtgccaattttggtgggctagt 55256171  T
Q  180 tt 181  Q
    ||    
T  55256170 tt 55256169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 56409956 - 56410029
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||| |||||||||| | ||||| |  ||||||||||||| ||||||||||||||||||||||||||||||    
T  56409956 acttgggctggcctggtgctgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 56410029  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 25414285 - 25414185
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||||||  |||| ||||| | |||||||||||||| |||||||||| |||||||||| |||||||| ||  ||||||||  ||||| |||||    
T  25414285 acttgggttggccttctggtgttggcttgagaccttggagtgtgctcctctcaaagtctcaggtttgattctccccggtgccaattttggtgggttagtt 25414186  T
Q  181 t 181  Q
    |    
T  25414185 t 25414185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 55427271 - 55427168
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||||||||| |  ||||| ||||| | ||||| ||| ||||||||||||||||||||| ||  ||||||||  |||||||| |    
T  55427271 acttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgattctccgcggtgccaatttgggtgggctaat 55427172  T
Q  180 ttag 183  Q
    ||||    
T  55427171 ttag 55427168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 25434726 - 25434630
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    |||||||||||||||||| | ||| |  ||||||||||||| || |||||||||||||||||| |||||||| |   ||||||||||||||||||||||    
T  25434726 ttgggttggcctggtggtgt-ggcttgggaccttggagtgtgcttctctcaaggtctcaggtttgattctcc-cattgccaatttcagtgggctagttt 25434630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 37455574 - 37455670
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagacctt-ggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 177  Q
    |||||||||||||||||||| ||||| |  |||||| ||||| | ||||||||||||||||||||||||||| ||| |  |||||||||| |||||||    
T  37455574 acttgggttggcctggtggtgttggcttgggacctttggagtatgctcctctcaaggtctcaggttcgattcccct-ggtgccaatttcaatgggcta 37455670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 46295102 - 46295211
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||| |||||| ||||| || ||||| |  ||| ||||||||| |||||| |||||||||||||||||||||||| ||  ||||||||  ||||||||||    
T  46295102 acttaggttggtctggtagtgttggcttgggacattggagtgtgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagt 46295201  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  46295202 ttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 8325450 - 8325347
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||| | |||||| ||||| | |||||||||||||| ||| || ||||||||| |||||||||||||| ||  | ||||||  ||||||||||    
T  8325450 acttgggttgggccggtggtgttggcttgagaccttggagtgtgctcatcctcaaggtcttaggttcgattctccccggtgtcaatttgggtgggctagt 8325351  T
Q  180 ttag 183  Q
    ||||    
T  8325350 ttag 8325347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 49576963 - 49576892
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||||||||||||| |  ||| | ||||||| |||||| |||||||||||||||||||||||    
T  49576963 ttgggttggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 49576892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 44865339 - 44865445
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||||| |||| ||||| | || |||||  |||| |||||| ||||||||| |||||||||||||| |   ||||||||| |||| |||||    
T  44865339 acttgggttggcctgatggtgttggcttgagtccttgatgtgtgctcctcctcaaggtcttaggttcgattctcccctgtgccaatttcggtggactagt 44865438  T
Q  180 ttagttt 186  Q
    |||||||    
T  44865439 ttagttt 44865445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 4686190 - 4686125
Alignment:
Q  89 tggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||| |||| ||||| | |||||||||||||| |||||||||| |||||||||| ||||||||    
T  4686190 tggcctgttggtgttggcttgagaccttggagtgtgctcctctcaatgtctcaggtttgattctcc 4686125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 21344822 - 21344895
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||||||||||| || | ||||| |  ||||||||||||| ||||||||||||||||| |||| |||||||    
T  21344822 acttgggttggcctgatgatgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcaattctcc 21344895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 32475166 - 32475093
Alignment:
Q  80 tacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    |||||||||||| || ||||| ||||| |  |||| |||||||  |||||||||||||||||||||||||||||    
T  32475166 tacttgggttggtctagtggtgttggcttgggaccctggagtgaactcctctcaaggtctcaggttcgattctc 32475093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 38206196 - 38206127
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||||||||| |||||||||  |||| |  ||||||||||||| ||||||||||||||||||||| ||||    
T  38206196 acttgggttgacctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgatt 38206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 32992647 - 32992727
Alignment:
Q  111 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||| ||  | |||||| ||||| ||||||||| ||||||    
T  32992647 gaccttggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttcttc 32992727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 42281304 - 42281240
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggtt 145  Q
    ||||||||||||| |||||| ||||| |  ||||||| ||||| |||||||||||||||||||||    
T  42281304 acttgggttggccaggtggtgttggcttgggaccttgtagtgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 19238648 - 19238545
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||||||||| |  ||| | ||||||| ||||| ||| ||||||| ||||||||||||| ||   |||||||  |||||||| |    
T  19238648 acttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggttcgattctccccggtaccaatttgggtgggctaat 19238549  T
Q  180 ttag 183  Q
    ||||    
T  19238548 ttag 19238545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 37720285 - 37720211
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||| ||||||| |  ||||| ||||||| | ||| ||||||||| |||||||||||||||    
T  37720285 acttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaaggtcccaggttcgattctcc 37720211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 2185099 - 2184994
Alignment:
Q  85 gggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttag 183  Q
    |||||||||| |||||| |||| |   |||| ||||||| ||||| ||||| ||||||||||||||||||  ||| |||||||| || ||| ||||||||    
T  2185099 gggttggcctagtggtaatggcttggaacctgggagtgtgctccttctcaaagtctcaggttcgattctctccgatgccaatttgagggggttagtttag 2185000  T
Q  184 tttctt 189  Q
     |||||    
T  2184999 cttctt 2184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 7949525 - 7949452
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    ||||||| |||||| | ||||||||| |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  7949525 acttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctc 7949452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 23377991 - 23378071
Alignment:
Q  111 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagtttagtttcttc 190  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| ||| || |||||||| || |||||||||||| ||||||    
T  23377991 gacctgggagtgtgctcctcctcaaggtctcaggttcgattct-ctctagtgccaatttgagggggctagtttagcttcttc 23378071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 30938257 - 30938180
Alignment:
Q  114 cttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||||||| |||||| || ||||||||||||||||||||| | | ||||||||  ||||| |||||||| ||||||    
T  30938257 cttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 30938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 38838835 - 38838912
Alignment:
Q  114 cttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||||| | |||||| ||||||||| |||||||||||||  ||| | ||||||| |||||||| ||||||||||||    
T  38838835 cttggagtatgctcctcctcaaggtcttaggttcgattctctccgatggcaatttcggtgggctaatttagtttcttc 38838912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 4088250 - 4088322
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcct 155  Q
    |||||||||||  ||||| ||||| | | ||||||||| ||  |||| |||||||||||||||||||||||||    
T  4088250 ttgggttggccgcgtggtgttggcttgaaaccttggagggtggtcctttcaaggtctcaggttcgattctcct 4088322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 19220558 - 19220625
Alignment:
Q  108 taagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggc 175  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| ||||| || |||||||||| |||||    
T  19220558 taagatcttggagtgtgctcctctcaaggtttcaggttcgatt-tcctctagtgccaatttcaatgggc 19220625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 37492786 - 37492715
Alignment:
Q  82 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||| || ||||  |  |||||||||||||  ||||||||||||||||||||||| |||||    
T  37492786 cttgggttggcctggtagtgttggt-tgggaccttggagtgtgatcctctcaaggtctcaggttcgactctcc 37492715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 7292869 - 7292759
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctag 178  Q
    ||||||||||| || ||||||||||| |   |||| ||||||| |||||| |||| ||||||||||||||||| ||| || |||||||| || ||| |||    
T  7292869 acttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattct-ctctagtgccaatttgagggggttag 7292771  T
Q  179 tttagtttcttc 190  Q
    ||||| ||||||    
T  7292770 tttagcttcttc 7292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 47183333 - 47183396
Alignment:
Q  87 gttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||| |||| |||| ||||| | ||||||||||||||  |||||||||| ||||||||||||||    
T  47183333 gttgacctgatggtgttggcttgagaccttggagtgtgatcctctcaagatctcaggttcgatt 47183396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 17701894 - 17701952
Alignment:
Q  95 ggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    |||||| ||||| | |||| ||||| ||| |||||||||||||||||| ||||||||||    
T  17701894 ggtggtgttggcttgagactttggaatgtgctcctctcaaggtctcagattcgattctc 17701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 46545716 - 46545786
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 150  Q
    |||||||||||||| ||||||||||| | ||||||  |||||| ||||| |||||| |||||| |||||||    
T  46545716 acttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgatt 46545786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 31141384 - 31141347
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcga 148  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  31141384 gaccttggagtgtgctcctctcaaggtctgaggttcga 31141347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 51250593 - 51250484
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||||||||| |  || || ||||||| ||||  |||||| ||||| ||||||||| |  ||  ||||||||  |||||||| |    
T  51250593 acttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagttcgattccctccggtgccaatttgggtgggctaat 51250494  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  51250493 ttagcttctt 51250484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 2732049 - 2732109
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||| ||||||||||||||||||  ||  ||||||||  |||||||||||||| ||||||    
T  2732049 ctcaaagtctcaggttcgattctctccggtgccaatttgggtgggctagtttagcttcttc 2732109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 28929707 - 28929747
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    ||||||| ||||| ||||| |||||||||||||||||||||    
T  28929707 gaccttgaagtgtgctcctttcaaggtctcaggttcgattc 28929747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 49262701 - 49262645
Alignment:
Q  134 aggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||||||||||| |   ||||||||  |||||||| ||||||||||||    
T  49262701 aggtctcaggttcgattctccccagtgccaatttaggtgggctaatttagtttcttc 49262645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 22760868 - 22760965
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 177  Q
    ||||||||||| |||||||||||| | |  ||||| ||||||| |||||| |||||||||||||||||||||||| ||| |||||||| |||||||||    
T  22760868 acttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtgggcta 22760965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 41487367 - 41487474
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||||||||||||||| |  ||| | |||||||||||  ||||||||||||||||||||||| | ||  ||||||||  |||||||| ||    
T  41487367 acttgggttggcctggtggtattggcttgggacttgggagtgttctc--ctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatt 41487464  T
Q  181 tagtttcttc 190  Q
    ||| ||||||    
T  41487465 tagcttcttc 41487474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 48125245 - 48125136
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||| |||||||| ||||| |  ||||||||||||| ||||||  |||||||||||||| ||| ||| ||  ||||||||| |||||||||||    
T  48125245 acttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggttcaattttccccggtgccaatttcggtgggctagtt 48125146  T
Q  181 tagtttcttc 190  Q
    | | ||||||    
T  48125145 tggcttcttc 48125136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 25956361 - 25956290
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||||| |||||||    
T  25956361 ttgggttggcctagtggtattggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctcc 25956290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 38374670 - 38374567
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||| ||||||| ||||| |  |||||| |||||| |||||| ||||||||| |||||||||||||| ||  ||||||||  ||||||||||    
T  38374670 acttgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagt 38374571  T
Q  180 ttag 183  Q
    ||||    
T  38374570 ttag 38374567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 30579340 - 30579410
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 150  Q
    |||||||||||||||||||||||||| | |||||| ||||||| | ||| |||||||||||||||||||||    
T  30579340 acttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgatt 30579410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 26459481 - 26459408
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||||||||||||||||||||||||    
T  26459481 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 5273661 - 5273552
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||| ||||| |  |||||| |||||| ||||| |||||||||| ||||| |||| ||  ||  ||||||||  ||||||||||    
T  5273661 acttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggtttgattgtctccggtgccaatttgggtgggctagt 5273562  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  5273561 ttagcttctt 5273552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 15905744 - 15905671
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||| ||||||||| |  ||||| ||||||| ||||||   |||||||||||||||||||||    
T  15905744 acttgggttggcctggcggtattggcttgggacctgggagtgtgctcctccttaggtctcaggttcgattctcc 15905671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 31835197 - 31835306
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||| ||||| |  |  |||||||||| |||||| |||||||||||||||||||| |||  |  ||||||||  | ||||||||    
T  31835197 acttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtctcaggttcgattatccctggtgccaattttggcgggctagt 31835296  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  31835297 ttagcttctt 31835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 43215189 - 43215262
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    ||||||||||| || ||||||||||| |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  43215189 acttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctc 43215262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 19553460 - 19553567
Alignment:
Q  82 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||||||||||||||||| |  ||||| ||||||| ||||| |||||||||| |||||| ||||||| ||   |||||||  |||||||| ||    
T  19553460 cttgggttggcctggtggtattggc-ttggacctgggagtgtgctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactt 19553558  T
Q  181 tagtttctt 189  Q
    ||| |||||    
T  19553559 tagcttctt 19553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 43590914 - 43590986
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||||||||| |  ||| | ||||||| ||||| ||||| |||||||||||||||||||    
T  43590914 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctcc 43590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 5579305 - 5579218
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaattt 167  Q
    |||||||||| ||||||||| ||||| |  ||||||||||||| ||||| |||||||||||||||| || ||||| ||  ||||||||    
T  5579305 acttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtttgactctccccggtgccaattt 5579218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 4566499 - 4566426
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||| | |  |||||||||||||  ||| ||||||||||||||||| |||||||    
T  4566499 acttgggttggcctagtggtattgacttcggaccttggagtgtattccttctcaaggtctcaggtttgattctc 4566426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 33869516 - 33869443
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| || |||||||| | |||||| | ||||| ||||| ||||||||||| ||||||||||||    
T  33869516 acttgggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtctctggttcgattctc 33869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 39631849 - 39631922
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||||||| |  ||||| |||||   |||||| |||||||||||||||||||||||    
T  39631849 acttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgattctc 39631922  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 48039718 - 48039617
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||| ||||| |  || |||||||| | ||||| | ||||||||||||||| |||||||  |  ||||||||| || |||||||    
T  48039718 acttgggttggcctggtggtgttggcttgcgatcttggagtatgctccttcgcaaggtctcaggttctattctccctggtgccaatttcggttggctagt 48039619  T
Q  180 tt 181  Q
    ||    
T  48039618 tt 48039617  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 7801185 - 7801253
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcga 148  Q
    |||||| ||||||||||||||||| | |  ||||| ||||||| |||||| ||||||||||||||||||    
T  7801185 acttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctcaggttcga 7801253  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 18847488 - 18847421
Alignment:
Q  86 ggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    ||||||||||||||| ||||| | ||| ||| |||||| ||||||||||| ||||| ||||| |||||    
T  18847488 ggttggcctggtggtgttggcttgagatcttcgagtgtgctcctctcaagatctcaagttcgtttctc 18847421  T

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Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 29538633 - 29538530
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||| | ||||| ||| | | |||| ||||||| | ||||| |||||||||||| ||||||||||||  || |||||||| |||| | ||||    
T  29538633 acttgggttggcattgtggtgttgacttgagacattggagtatactccttctcaaggtctcaagttcgattctccctgatgccaatttgagtgagttagt 29538534  T
Q  180 ttag 183  Q
    ||||    
T  29538533 ttag 29538530  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 46279049 - 46279092
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcc 154  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||    
T  46279049 gaccttggagtgtgctcctctcaaggtctccggtttgattctcc 46279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 11721031 - 11720921
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||| ||||||||||||||||||||| |  ||||| ||| ||| ||||| || ||||| |||| ||||||||||| |   ||||||||  |||||||| |    
T  11721031 acttcggttggcctggtggtattggcttgggacctgggaatgtgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaat 11720932  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  11720931 ttagcttcttc 11720921  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 29385814 - 29385704
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||| | |||| ||||| |  ||| ||||||||| |||||| ||||||||||||||| ||||||| | |  ||||||||  |||||||| |    
T  29385814 acttgggttggccggatggtgttggcttgggactttggagtgtgctcctcctcaaggtctcaggtttgattctctttggtgccaatttgggtgggctact 29385715  T
Q  180 ttagtttcttc 190  Q
    || | ||||||    
T  29385714 tttgcttcttc 29385704  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 18363701 - 18363774
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||||||| ||| | |||  | ||||||| |||||| ||||||||||||||| |||||||    
T  18363701 acttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgattctc 18363774  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 22696355 - 22696392
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  22696355 cttggagtgtgctcctctcaaggtctcaggtttgattc 22696392  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 23552123 - 23552196
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||| ||||| | |  ||||| ||||||| |||||| ||||||||||| |||||||||||    
T  23552123 acttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctc 23552196  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 28647004 - 28647041
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||| || ||||||||||||||||||||||||    
T  28647004 cttggagtgtgcttctctcaaggtctcaggttcgattc 28647041  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 30442493 - 30442566
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||  ||||||||||| |  ||||| ||||| | |||||| ||||||||| |||||||||||||    
T  30442493 acttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcgattctc 30442566  T

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Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 33460491 - 33460383
Alignment:
Q  84 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctc--tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    ||||||||  ||||||||||||  |  ||||| |||||||  |||||  |||||||||||| ||||||||||| ||  | ||||||  ||||||||||||    
T  33460491 tgggttggtttggtggtattggtttgggacctaggagtgtggtcctccttcaaggtctcagattcgattctccccggtgtcaatttatgtgggctagttt 33460392  T
Q  182 agtttcttc 190  Q
    || ||||||    
T  33460391 agcttcttc 33460383  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 11700220 - 11700275
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagttt 186  Q
    ||||||||||||||||||||||| |||   |||||||| ||||||||| ||||||||    
T  11700220 ctcaaggtctcaggttcgattct-ctctgtgccaatttgagtgggctaatttagttt 11700275  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 20468345 - 20468293
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 182  Q
    |||||||||| ||||||||||||||  || ||||||||  |||||||||||||    
T  20468345 ctcaaggtcttaggttcgattctcccagatgccaatttgggtgggctagttta 20468293  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 21574268 - 21574232
Alignment:
Q  115 ttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  21574268 ttggagtgtgctcctctcaaggtcacaggttcgattc 21574232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 25132435 - 25132375
Alignment:
Q  95 ggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||| | || ||||| ||||||| ||||| || ||||||||||||||||||||||    
T  25132435 ggtggtattgacttaggacctaggagtgtgctccttcttaaggtctcaggttcgattctcc 25132375  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 15581212 - 15581112
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||||||| |||||||||||||| ||||||| ||  ||  ||||| |||||||||||    
T  15581212 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctcaggttcaattctccccggtgctgatttcggtgggctagtt 15581113  T
Q  181 t 181  Q
    |    
T  15581112 t 15581112  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 41470677 - 41470583
Alignment:
Q  85 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||| |||||| ||||| | |||||||||||| | ||||||||||||||||| ||||||||| || |   ||||||||||||||||||||    
T  41470677 gggttggcccggtggtgttggcttgagaccttggagtatgctcctctcaaggtctcaagttcgattccccacagtgccaatttcagtgggctagt 41470583  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 37046990 - 37047060
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    ||||||||||| |||||||| ||||| |  ||||||||||||| ||||||||||||||||||||| |||||    
T  37046990 acttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattc 37047060  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 39012296 - 39012394
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||| ||||||||| ||||| ||||| |  ||||||||||||| ||| ||||||||||| ||||| ||||| |||||  ||||||||| ||||||||||    
T  39012296 actttggttggcctagtggtgttggcttgggaccttggagtgtgctcttctcaaggtcttaggtttgattcccctcggtgccaatttcggtgggctagt 39012394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 43445969 - 43446071
Alignment:
Q  82 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||||||||| || |||| ||||| |  | ||||||||||| |||||| ||||||||||| |||||||||||| ||  |||||||| ||||||||||||    
T  43445969 cttgggttggcttgatggtgttggcttgggtccttggagtgtgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtt 43446068  T
Q  181 tag 183  Q
    |||    
T  43446069 tag 43446071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 21694451 - 21694557
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    |||||||||| ||||||||||||||| | |||| | ||||||| ||||||  |||||||||||||||||||| |||   ||||||||   ||| ||||||    
T  21694451 acttgggttgacctggtggtattggcttgagacttgggagtgtgctcctc--aaggtctcaggttcgattcttctcagtgccaatttggctggactagtt 21694548  T
Q  181 tagtttctt 189  Q
    |||||||||    
T  21694549 tagtttctt 21694557  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 6128027 - 6127948
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||||||| || ||||||||||||||||| |||||||||||| ||  ||||||||  |||||||||||| | ||||||    
T  6128027 gaccttggagcgtgctcctctcaaggtctcaagttcgattctccccggtgccaattttggtgggctagtttggcttcttc 6127948  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 38939237 - 38939316
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    ||||||||||||| |||||||||||||||| |||| |||||||| | | | ||||||| |||||||||||| | ||||||    
T  38939237 gaccttggagtgtgctcctctcaaggtctctggtttgattctccccaatgtcaatttcggtgggctagtttggcttcttc 38939316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 48400178 - 48400249
Alignment:
Q  82 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| |||||||||| |  |||||||||| |  |||||||||||||||||||| ||||||||    
T  48400178 cttgggttggcctgatggtattggcttgggaccttggagcgcactcctctcaaggtctcaggtgcgattctc 48400249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 52030004 - 52029901
Alignment:
Q  85 gggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattct-cctcgaggccaatttcagtgggctagttta 182  Q
    ||||||||  |||||||||| | | |||||| ||||||| ||||| ||||||||||||||||||||||| || ||| ||||||||  |||||||| ||||    
T  52030004 gggttggctaggtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgattctcccccgatgccaatttgggtgggctaattta 52029905  T
Q  183 gttt 186  Q
    ||||    
T  52029904 gttt 52029901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 19528398 - 19528324
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||||||||||| |  || ||  |||||| ||||| |||||||||||||||||||||||||    
T  19528398 acttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctcc 19528324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 39714849 - 39714751
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||| | ||||  ||||| |  || |||||||||| ||||||||||||||||| ||| |||||||||||  ||| ||||| ||||||||||    
T  39714849 acttgggttggcatagtggcgttggcttgggatcttggagtgtgctcctctcaaggtctcaagtttgattctcctcggtgccgatttcggtgggctagt 39714751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 40257404 - 40257514
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||||||||||||||| | |||||| ||||||| ||||| ||| |||||||| |||| |||||   ||  | ||||||  ||||||||||    
T  40257404 acttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagt 40257503  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  40257504 ttagcttcttc 40257514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 31605913 - 31605816
Alignment:
Q  87 gttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttag 183  Q
    ||||||||| |||| ||||| |  ||||||| ||||| |||||| ||||||||||| |||||||||||| ||  ||||||||  ||||||||||||||    
T  31605913 gttggcctgatggtgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagtttag 31605816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 36371475 - 36371584
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |   |||| ||||||| |||||| ||||||||| |||||||||||||   || |||||||| || ||| ||||    
T  36371475 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctctgatgccaatttgagggggttagt 36371574  T
Q  180 ttagtttctt 189  Q
    |||| |||||    
T  36371575 ttagcttctt 36371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 24019078 - 24019138
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 190  Q
    |||||||||| |||||||||||||||||   |||||||| |||||||||||||| ||||||    
T  24019078 ctcaaggtcttaggttcgattctcctcggtaccaatttcggtgggctagtttagcttcttc 24019138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 34228879 - 34228979
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 180  Q
    ||||| ||||| |||||||| ||||| |  ||||| |||||||  |||||||||||||||||||| |||||||  ||  ||||||||  |||||||||||    
T  34228879 acttgagttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctcaggttggattctctccggtgccaattttggtgggctagtt 34228978  T
Q  181 t 181  Q
    |    
T  34228979 t 34228979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 39964512 - 39964580
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 151  Q
    |||||||||||| | ||| ||||| |  ||||||||||||| ||||||||||||||||||||| |||||    
T  39964512 ttgggttggcctagaggtgttggcttgcgaccttggagtgtgctcctctcaaggtctcaggtttgattc 39964580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 24730389 - 24730492
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||| | | ||| || ||||||| |||||| |||||||| |||||| ||| |||||||  ||||||||  |||||||| |    
T  24730389 acttgggttggcctagtggtattgtcttgagatctgggagtgtgctcctcttcaaggtcccaggtttgatcctcctcggtgccaatttgggtgggctaat 24730488  T
Q  180 ttag 183  Q
    ||||    
T  24730489 ttag 24730492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 51814499 - 51814602
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||||| |||||||| | | ||| ||  |||||| |||||| |||||||||||||||||||||||  ||  ||||||||  |||||||| |    
T  51814499 acttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaat 51814598  T
Q  180 ttag 183  Q
    ||||    
T  51814599 ttag 51814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 4824976 - 4825050
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    ||||||||||| ||| |||| ||||| |  ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  4824976 acttgggttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtctcaggtttgattctcc 4825050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 9165266 - 9165156
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||||| ||||||||||| ||||||   |  |||||||| || ||| || |    
T  9165266 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctctggtgccaatttgagggggttact 9165167  T
Q  180 ttagtttcttc 190  Q
    |||||||||||    
T  9165166 ttagtttcttc 9165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 19940959 - 19940833
Alignment:
Q  65 ataacaataacagcctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggcca 163  Q
    |||| ||||||| || ||||||||||| |||||||| || || |  | ||||||||||| |||||| | ||||||||||||| |||||||  ||  ||||    
T  19940959 ataataataacaacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctctccggtgcca 19940860  T
Q  164 atttcagtgggctagtttagtttcttc 190  Q
    ||||  ||||||| |||||| ||||||    
T  19940859 atttatgtgggctggtttagcttcttc 19940833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 33700849 - 33700771
Alignment:
Q  76 agcctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||| |||||||||||||| ||||||||||| |   | || ||||||| |||||| |||||||||||||||||||||||    
T  33700849 agcccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 33700771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 36428717 - 36428827
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||||| |||||| ||||| |   |||||||||| | |||||| ||||||||||| ||| |||||||| ||  ||||||||  ||||||||||    
T  36428717 acttgggttggccgggtggtgttggcttggtaccttggagtatgctcctcctcaaggtctcatgtttgattctccccggtgccaatttgggtgggctagt 36428816  T
Q  180 ttagtttcttc 190  Q
    || | ||||||    
T  36428817 tttgcttcttc 36428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 44486197 - 44486128
Alignment:
Q  112 accttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 181  Q
    |||||||||||| |||||||||||||||||  ||| ||||||| ||  ||||||||| ||||| ||||||    
T  44486197 accttggagtgtgctcctctcaaggtctcaaattcaattctccccggtgccaatttcggtgggttagttt 44486128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 24217009 - 24217045
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgatt 150  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24217009 cttggagtgtgctcctctcaaggtctcaggttcgatt 24217045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 49101837 - 49101781
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtct 139  Q
    |||||||||||| ||| | ||||| | |||||||||||||| |||||||||||||||    
T  49101837 ttgggttggcctagtgttgttggcttcagaccttggagtgtgctcctctcaaggtct 49101781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 52116850 - 52116778
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 154  Q
    |||||||||||||||||||||||| |  ||| | ||||||| ||||| ||||| ||||||||||| |||||||    
T  52116850 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcaattctcc 52116778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 2799874 - 2799977
Alignment:
Q  88 ttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagttt 186  Q
    ||||||| ||||||| ||| | ||| || ||||||| |||||| |||||||||||||||||||||||   |  |||||||| || ||| |||||||| ||    
T  2799874 ttggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagctt 2799973  T
Q  187 cttc 190  Q
    ||||    
T  2799974 cttc 2799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 19480565 - 19480628
Alignment:
Q  114 cttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 177  Q
    |||||||||| |||||||||||||||||  |||||||| || ||  |||||||| |||||||||    
T  19480565 cttggagtgtgctcctctcaaggtctcacattcgattccccgcggtgccaattttagtgggcta 19480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 24857901 - 24857830
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 152  Q
    |||||||||||||||||||| |||||    ||||||||||||  || |||||||| ||||||||| ||||||    
T  24857901 acttgggttggcctggtggtgttggctagggaccttggagtgggcttctctcaagctctcaggtttgattct 24857830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 39966128 - 39966207
Alignment:
Q  111 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttctt 189  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||| ||  || |||||  ||| |||||||||| |||||    
T  39966128 gaccttggagtgtactcctcctcaaggtctcaggttcgtttctccccggtgctaatttgggtgtgctagtttagcttctt 39966207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 45232071 - 45232126
Alignment:
Q  86 ggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctca 141  Q
    ||||||||| ||||| | ||| |||||||||||||||  |||||||||||||||||    
T  45232071 ggttggcctagtggtgtaggcttaagaccttggagtgcgctcctctcaaggtctca 45232126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 16170049 - 16169975
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    ||||||||| |||||||||||||| | |  ||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  16170049 acttgggttagcctggtggtattgacttgggacctgggagtgtgttcctcctcaaggtttcaggttcgattctcc 16169975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 16893399 - 16893509
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||| |||| |||||||||| | |||  | ||||||| |||||| || ||||||||||||||||| ||  ||  | |||||| ||||||||| |    
T  16893399 acttgggttgacctgttggtattggcttgagatttgggagtgtactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaat 16893498  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  16893499 ttagcttcttc 16893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 17424561 - 17424451
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||| ||| |||| ||  ||| |||||||||||| | |||||| | |||||| ||| ||||||| || |||  ||||||||  ||||||||||    
T  17424561 acttgggttggtctgatggtgttaacgtgagaccttggagtatgctcctcgttaaggtcccagtttcgattatcttcggtgccaatttgggtgggctagt 17424462  T
Q  180 ttagtttcttc 190  Q
    |||||| ||||    
T  17424461 ttagttacttc 17424451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 21547551 - 21547449
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    |||||||||||||| ||||||||||| |  ||| | |||| || ||||| ||| |||| |||||||||||||||   || ||||||||  ||||||||||    
T  21547551 acttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctgatgccaatttaggtgggctagt 21547452  T
Q  180 tta 182  Q
    |||    
T  21547451 tta 21547449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 44417502 - 44417437
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 177  Q
    ||||||||||||| || |||||||||||||||||| ||||| || ||  |||||||||||| |||||    
T  44417502 gaccttggagtgtgctgctctcaaggtctcaggtttgattc-ccccggtgccaatttcagtaggcta 44417437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 4566553 - 4566626
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||||||||||||| ||| ||||||| |   |||| ||||||| |||||| ||| |||||||||||||||||||    
T  4566553 acttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctc 4566626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 15786391 - 15786318
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    ||||||||||| || || |||||||| |  || || ||||||| |||||| |||||||||||||||||||||||    
T  15786391 acttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 15786318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 45266889 - 45266942
Alignment:
Q  130 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttag 183  Q
    ||||||||||||||||||||||||| ||  ||||||||   |||||||||||||    
T  45266889 ctcaaggtctcaggttcgattctccccggtgccaatttggatgggctagtttag 45266942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 47360554 - 47360517
Alignment:
Q  111 gaccttggagtgttctcctctcaaggtctcaggttcga 148  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  47360554 gaccttggagtgtgctcctctcaagatctcaggttcga 47360517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 8177247 - 8177143
Alignment:
Q  87 gttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtt 185  Q
    |||||||| ||||||||||| |  || || ||||||| |||||| ||||||| |||||||||||||||   |  |||||||| || ||| |||||||| |    
T  8177247 gttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctggtgccaatttgagggggttagtttagct 8177148  T
Q  186 tcttc 190  Q
    |||||    
T  8177147 tcttc 8177143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 18928352 - 18928408
Alignment:
Q  96 gtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 152  Q
    ||||| ||||| | |||||||  ||||| |||||||||||||||||||||| |||||    
T  18928352 gtggtgttggcttgagaccttaaagtgtgctcctctcaaggtctcaggttcaattct 18928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 37400279 - 37400351
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattct 152  Q
    ||||||||||| |||||||||||||| | ||||||   ||||| ||||| || ||||||||| ||||||||||    
T  37400279 acttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgattct 37400351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 15394 - 15284
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 179  Q
    ||||||||||| |||||||||||||| |  ||||| ||||||| ||||| ||| ||||||||||||||||||||   || ||||||||  |||||||| |    
T  15394 acttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaat 15295  T
Q  180 ttagtttcttc 190  Q
    |||| ||||||    
T  15294 ttagcttcttc 15284  T

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Target: scaffold0194 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 13117 - 13044
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 153  Q
    |||| ||||||| ||||||||||||| | ||| || ||||||| |||||| |||||||||||||||||||||||    
T  13117 acttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 13044  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 11534 - 11606
Alignment:
Q  82 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 153  Q
    |||||| |||||||||||||||||| |  || || ||||||| ||||| ||| ||||||||||||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctc 11606  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 15842 - 15739
Alignment:
Q  87 gttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtt 185  Q
    |||||||||||||||||||| |  ||  ||||||| | |||||| ||||||||||| ||| |||||||| ||  ||||||||  |||||||| ||||| |    
T  15842 gttggcctggtggtattggcttgggattttggagtatgctcctcctcaaggtctcaagtttgattctccgcggtgccaatttgggtgggctaatttagct 15743  T
Q  186 tctt 189  Q
    ||||    
T  15742 tctt 15739  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 95042 - 94976
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttc 146  Q
    |||||||||||||| ||||||||||| |   |||| ||||||| ||||| |||||||||||||||||    
T  95042 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttc 94976  T

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Target: scaffold0517 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 7797 - 7725
Alignment:
Q  81 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattct 152  Q
    ||||||||||| |||||||||||||| | ||||||   ||||| ||||| || ||||||||| ||||||||||    
T  7797 acttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgattct 7725  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 2539 - 2467
Alignment:
Q  83 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 154  Q
    ||||||||| | |||||||||||  |  || || ||||||| |||||| ||||||||||||||||||||||||    
T  2539 ttgggttggtccggtggtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 2467  T

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