View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_low_19 (Length: 254)
Name: NF13492_low_19
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49351608 - 49351844
Alignment:
| Q |
1 |
tcatcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49351608 |
tcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaaca |
49351707 |
T |
|
| Q |
101 |
catcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351708 |
tatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgaca |
49351807 |
T |
|
| Q |
201 |
cattcatatgtgattggttctgatgtgataggaaggg |
237 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
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| T |
49351808 |
cattcatatgtgattgattctgatgtgataggaaggg |
49351844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 49340244 - 49340478
Alignment:
| Q |
1 |
tcatcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaaca |
100 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
49340244 |
tcatcaacacttctggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatggcacatcaaatcaaaca |
49340343 |
T |
|
| Q |
101 |
catcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgaca |
200 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49340344 |
tatcaaagaaagatttgataagtttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgaca |
49340443 |
T |
|
| Q |
201 |
cattcatatgtgattggttctgatgtgataggaag |
235 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
49340444 |
cattcatatgtgattgattctgatgtgataggaag |
49340478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32784667 - 32784433
Alignment:
| Q |
1 |
tcatcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| || |||| | || ||||||||||| |
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| T |
32784667 |
tcatcaacacttcaggtagcatcagaaggaaggtaaaacgtttcttctcaaattctaatcctcttgtttaccgccttaaaatggtgcatcaaatcaaaca |
32784568 |
T |
|
| Q |
101 |
catcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |
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| T |
32784567 |
tatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataaccgtgttgtaaaaagacgtgaattgaca |
32784468 |
T |
|
| Q |
201 |
cattcatatgtgattggttctgatgtgataggaag |
235 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |
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|
| T |
32784467 |
cattcatatgtgaatgattctgatgtgataggaag |
32784433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13441495 - 13441294
Alignment:
| Q |
1 |
tcatcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| || |||| ||||| ||||| ||||| |
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| T |
13441495 |
tcatcaacacttcaggtagcatcagaaggaaagtaaaatgtttcttctcggattctaatcctcttgtttatcgccttaaaatggcacatcaaattaaaca |
13441396 |
T |
|
| Q |
101 |
catcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgaca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
13441395 |
tatcaaagaaagatttgataaggttgctgctgatagacataagtttgttcttcaaatcaatgatagtgataaccgtgttgtaaaaaggcgtgaattgaca |
13441296 |
T |
|
| Q |
201 |
ca |
202 |
Q |
| |
|
|| |
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|
| T |
13441295 |
ca |
13441294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 29742975 - 29743206
Alignment:
| Q |
4 |
tcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaacacat |
103 |
Q |
| |
|
|||||||||| ||||||||| || |||||||| || | | |||||| | ||||||| ||||||||||||| || |||| ||||| ||||||||||| || |
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| T |
29742975 |
tcaacacttctggtagcatcggaaggaaggtacaacgatacttctccagttctaattttcttgtttatcgccttaaaatggcacatcaaatcaaacatat |
29743074 |
T |
|
| Q |
104 |
caaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacat |
203 |
Q |
| |
|
|| ||| ||| ||||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||| || ||||| ||| |
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| T |
29743075 |
taataagaaattgaataaggttgctgctgatcggcataactttggccttcgaatcaatgatagtgataatcatgttgtaaaaaggcgtgagttgactcat |
29743174 |
T |
|
| Q |
204 |
tcatatgtgattggttctgatgtgataggaag |
235 |
Q |
| |
|
|| |||| |||| |||||||||||||||||| |
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|
| T |
29743175 |
tcgcatgtaattgattctgatgtgataggaag |
29743206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 29603282 - 29603049
Alignment:
| Q |
4 |
tcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaacacat |
103 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| | ||| ||| || | |||||||||||||||||||||| || |||| ||||| ||||||||||| || |
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|
| T |
29603282 |
tcaacacttctggtagcatcagaaggaaggtacgacgttacttatccagttctaatcctcttgtttatcgccttaaaatggcacatcaaatcaaacatat |
29603183 |
T |
|
| Q |
104 |
caaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacat |
203 |
Q |
| |
|
|| ||||||| ||||| ||||||| ||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||| ||| |
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|
| T |
29603182 |
taataagagattgaataagaacgctgctgctaggcataattttggccttcaaatcaatgatagcgataatcatgttgtaaaaaggcgggagttgactcat |
29603083 |
T |
|
| Q |
204 |
tcatatgtgattggttctgatgtgataggaaggg |
237 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||| |
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|
| T |
29603082 |
tcgcatgtagttgattctgatgtgataggaaggg |
29603049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 29750012 - 29750245
Alignment:
| Q |
4 |
tcaacacttcaggtagcatcagagggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatagcacaccaaatcaaacacat |
103 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| | ||| ||| || | |||||||||||||||||||||| || |||| ||||| ||||||||||| | |
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|
| T |
29750012 |
tcaacacttctggtagcatcagaaggaaggtacgacgttacttatccagttctaatcctcttgtttatcgccttaaaatggcacatcaaatcaaacatgt |
29750111 |
T |
|
| Q |
104 |
caaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacat |
203 |
Q |
| |
|
|| ||||||| ||||| ||||||| ||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||| ||| |
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|
| T |
29750112 |
taataagagattgaataagaacgctgctgctaggcataattttggccttcaaatcaatgatagcgataatcatgttgtaaaaaggcgggagttgactcat |
29750211 |
T |
|
| Q |
204 |
tcatatgtgattggttctgatgtgataggaaggg |
237 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||| |
|
|
| T |
29750212 |
tcgcatgtagttgattctgatgtgataggaaggg |
29750245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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