View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13492_low_2 (Length: 1132)

Name: NF13492_low_2
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13492_low_2
NF13492_low_2
[»] chr7 (21 HSPs)
chr7 (11-1117)||(4647063-4648151)
chr7 (471-591)||(4666917-4667039)
chr7 (454-585)||(4712075-4712208)
chr7 (454-591)||(4846009-4846148)
chr7 (455-589)||(4783831-4783967)
chr7 (455-589)||(4816260-4816396)
chr7 (455-589)||(4636820-4636956)
chr7 (535-591)||(4643714-4643772)
chr7 (10-144)||(17245446-17245580)
chr7 (535-591)||(4863965-4864023)
chr7 (332-390)||(4630780-4630838)
chr7 (448-571)||(4653476-4653601)
chr7 (324-364)||(4846225-4846265)
chr7 (536-591)||(4630971-4631028)
chr7 (324-366)||(4636708-4636750)
chr7 (330-366)||(4661649-4661685)
chr7 (330-366)||(4666786-4666822)
chr7 (330-390)||(4672527-4672587)
chr7 (535-591)||(4697184-4697242)
chr7 (536-591)||(4672720-4672777)
chr7 (334-375)||(4653375-4653416)
[»] scaffold0252 (1 HSPs)
scaffold0252 (14-230)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (12-230)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (14-198)||(8562975-8563159)
chr3 (12-198)||(6009013-6009199)
chr3 (12-161)||(17783823-17783976)
chr3 (12-161)||(19085342-19085495)
chr3 (12-161)||(19092450-19092603)
[»] chr4 (1 HSPs)
chr4 (454-591)||(18925736-18925875)
[»] chr8 (2 HSPs)
chr8 (12-200)||(15993397-15993585)
chr8 (12-198)||(14502697-14502883)
[»] chr5 (3 HSPs)
chr5 (12-198)||(22289352-22289538)
chr5 (15-200)||(28243619-28243804)
chr5 (1084-1117)||(36795091-36795124)
[»] chr6 (1 HSPs)
chr6 (32-161)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 913; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 11 - 1117
Target Start/End: Original strand, 4647063 - 4648151
Alignment:
Q  11 acatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgag 110  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |    
T  4647063 acatcatcatcaagagaggttatacggtttaactttttccgagctgttgccgatgcatgaaaaaactttgtatttctatcaccatccttgtacaagtgtg 4647162  T
Q  111 ctttagcacattgatgccaata--ggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagct 208  Q
    ||||||||| |||| |||||||  ||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||    
T  4647163 ctttagcacgttgacgccaatataggcatcgtcttaggacatcagccgttgcaagcgtttccttagctcaaacatgcgagtttggtcctcaccagtagct 4647262  T
Q  209 tgcagccgtgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctccagacggacatatcctccgcgcatg 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4647263 tgcagccgcgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctccagacggacatatccttcccgcatg 4647362  T
Q  309 atattaattttggaataatcattgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacatatgaacaagcacaatcctt 408  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4647363 atatcaattttggaataatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacatatgaacaagcacaatcctt 4647462  T
Q  409 attgacagggagcaccagcccatgcaatcacataccagcccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaact 508  Q
    |||||||||||||||||                    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4647463 attgacagggagcacca--------------------gcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaact 4647542  T
Q  509 gtatcacctgcattctttatatgtcaatcaaactcacaaaagtaaccttaccatataagtaaaaccagaatcaacttcaaaataagttgatggacaggat 608  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647543 gtatcacctgaattctttatatgtcaatcaaactcacaaaagtaaccttaccatataagtaaaaccagaatcaacttcaaaataagttgatggacaggat 4647642  T
Q  609 agatagagtgaaaaaagagaaaactttgaaaactaattcttaatacatttctactcatttcaccattactaatttgacacattgcctttactttctcagt 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647643 agatagagtgaaaaaagagaaaactttgaaaactaattcttaatacatttctactcatttcaccattactaatttgacacattgcctttactttctcagt 4647742  T
Q  709 ttatattgagtgtaactaaatttttacttggaagaattgggaattgaacatgagagtttgaagagtagcacattcaactctaagattccaaggcaatacc 808  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647743 ttatattgagtgtaactaaatttttacttggaagaattgggatttgaacatgagagtttgaagagtagcacattcaactctaagattccaaggcaatacc 4647842  T
Q  809 accacacctacccaactgcgttttctcttggctaaatttgaattttaaaatatgattaaggttaactcaatcaacatcactaaaattgtaatagcttacc 908  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647843 accacacctacccaactgcgttttctcttggctaaaattgaattttaaaatatgattaaggttaactcaatcaacatcactaaaattgtaatagcttacc 4647942  T
Q  909 tcccctcccattaaaaaagacccaattttggggagcaaatattaagtttgtgagagattttgtttcccacgtattccctcttcaaaattgaaccaataca 1008  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||    
T  4647943 tcccctcccattaaaaaagacccaatttcggggagcaaatattgagtttgtgagagattttgtgtcccacttattccctcttcaaaattgaaccaacaca 4648042  T
Q  1009 tatgattaacaacatttcctcctctcctctcccctccatctaccccgaaccaaaatagaagtgttggaaatatagaattatcattaaatagtaaatcaaa 1108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4648043 tatgattaacaacatttcctcctctcctctcccctccatctaccccgaaccaaaatagaagtgttggaaatatagaattatcattaaatagtaaatcaaa 4648142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 471 - 591
Target Start/End: Original strand, 4666917 - 4667039
Alignment:
Q  471 gttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gtaaccttaccatataagt 568  Q
    ||||| ||| ||||||||||||||| || ||||||||| ||||||||| |||||| ||||| |||||||||||||||||  | |||||||||||||||||    
T  4666917 gttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagt 4667016  T
Q  569 aaaaccagaatcaacttcaaaat 591  Q
    ||||  ||||||||||| |||||    
T  4667017 aaaaatagaatcaactttaaaat 4667039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 454 - 585
Target Start/End: Complemental strand, 4712208 - 4712075
Alignment:
Q  454 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 551  Q
    |||||||||||| ||||||||| ||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   |||||||||||||||  ||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 4712109  T
Q  552 aaccttaccatataagtaaaaccagaatcaactt 585  Q
    |||||||||||||||||||||| |||||||||||    
T  4712108 aaccttaccatataagtaaaactagaatcaactt 4712075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 454 - 591
Target Start/End: Complemental strand, 4846148 - 4846009
Alignment:
Q  454 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 551  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| || ||||||||| ||||||||  ||||||  || |   |||||||||||||||  ||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgt 4846049  T
Q  552 aaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  4846048 aaccttaccatataagtaaaactagaatcaacttcgaaat 4846009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 455 - 589
Target Start/End: Complemental strand, 4783967 - 4783831
Alignment:
Q  455 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 552  Q
    ||||||||||||   |||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4783967 atcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4783868  T
Q  553 accttaccatataagtaaaaccagaatcaacttcaaa 589  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4783867 accttaccatataagtaaaagcagaatcaacttcaaa 4783831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 455 - 589
Target Start/End: Complemental strand, 4816396 - 4816260
Alignment:
Q  455 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 552  Q
    |||||||||||| |  ||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4816396 atcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4816297  T
Q  553 accttaccatataagtaaaaccagaatcaacttcaaa 589  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4816296 accttaccatataagtaaaagcagaatcaacttcaaa 4816260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 455 - 589
Target Start/End: Original strand, 4636820 - 4636956
Alignment:
Q  455 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 552  Q
    |||||||| || | || |||||||||| | | |||||| || || ||||| ||| ||||||||  ||  || ||||| |||||||||||||||||  |||    
T  4636820 atcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgta 4636919  T
Q  553 accttaccatataagtaaaaccagaatcaacttcaaa 589  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4636920 accttaccatataagtaaaagcagaatcaacttcaaa 4636956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 535 - 591
Target Start/End: Original strand, 4643714 - 4643772
Alignment:
Q  535 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  4643714 atcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaat 4643772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 17245446 - 17245580
Alignment:
Q  10 gacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtga 109  Q
    ||||||||| ||||||||  | || || ||||||||||| | |||| | || |||||||||||||| || || ||||||||||||||||||||||| |||    
T  17245446 gacatcatcgtcaagagaaataatgcgatttacctttttacgagctgtagcagatgcatgaaaaaatttggtgtttctatcgccatccttgtaccaatga 17245545  T
Q  110 gctttagcacattgatgccaataggcatcgtcttg 144  Q
    |  || |||| |||  ||||||| ||||| |||||    
T  17245546 gtctttgcacgttgccgccaataagcatcatcttg 17245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 535 - 591
Target Start/End: Original strand, 4863965 - 4864023
Alignment:
Q  535 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  4863965 atcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaat 4864023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 4630780 - 4630838
Alignment:
Q  332 gaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 390  Q
    |||||||||||||||||||||||||||||||||||   |||||| || |||||||||||    
T  4630780 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 4630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 448 - 571
Target Start/End: Original strand, 4653476 - 4653601
Alignment:
Q  448 ccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaa 547  Q
    ||||| |||||||||||||| | ||||| |||| | ||||| |||||| || || |||||| ||||||||  || ||| ||| | |||||||| ||||||    
T  4653476 ccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaa 4653575  T
Q  548 aa--gtaaccttaccatataagtaaa 571  Q
    ||  ||||||| ||||||||||||||    
T  4653576 aaatgtaacctgaccatataagtaaa 4653601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 4846265 - 4846225
Alignment:
Q  324 taatcattgaagcttgattgaaagattaactctttcaattt 364  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  4846265 taatcgttgaagcttgattgaaagattaactctttcaattt 4846225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 536 - 591
Target Start/End: Original strand, 4630971 - 4631028
Alignment:
Q  536 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    ||||||||||||||  |||| ||||||||||||||||||  |||||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaat 4631028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 4636708 - 4636750
Alignment:
Q  324 taatcattgaagcttgattgaaagattaactctttcaatttga 366  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  4636708 taatcgttgaagcttgattgaaagataaactctttcaatttga 4636750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 4661649 - 4661685
Alignment:
Q  330 ttgaagcttgattgaaagattaactctttcaatttga 366  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4661649 ttgaagcttgattgaaagatcaactctttcaatttga 4661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 4666786 - 4666822
Alignment:
Q  330 ttgaagcttgattgaaagattaactctttcaatttga 366  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4666786 ttgaagcttaattgaaagattaactctttcaatttga 4666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 4672527 - 4672587
Alignment:
Q  330 ttgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 390  Q
    ||||||||| || ||||||||||||||||||||||||   |||||| || |||||||||||    
T  4672527 ttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacata 4672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 535 - 591
Target Start/End: Complemental strand, 4697242 - 4697184
Alignment:
Q  535 atcaaactcacaaaagt--aaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    ||||||||||||||| |  ||||||||||||||||||||||||  ||||||||| ||||    
T  4697242 atcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaat 4697184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 536 - 591
Target Start/End: Original strand, 4672720 - 4672777
Alignment:
Q  536 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    ||||||||||||||  ||||||||||||||||||| |||  ||||||||| |||||||    
T  4672720 tcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaaaat 4672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 4653375 - 4653416
Alignment:
Q  334 agcttgattgaaagattaactctttcaatttgattccttcct 375  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  4653375 agcttgattgtaagattaactctttcaatttgagtgcttcct 4653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 105; Significance: 7e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 5062 - 4846
Alignment:
Q  14 tcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctt 113  Q
    |||||||||||||| |||||||| |||||||||||||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  5062 tcatcatcaagagatgttatacgatttacctttttccaggctgttgccgaggcatgaaaaaacttcgtatttctatcaccatccttgtaccagtgagttt 4963  T
Q  114 tagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagcttgcag 213  Q
    |||||| |||| |||||||||||||||||||||||| ||  |||||||   |||||| ||| |||| ||| | | |||| ||||| | || ||| ||||     
T  4962 tagcacgttgacgccaataggcatcgtcttgggacaacaagcgttgcatacgtttccgaagttcaagcatacgattttgatcctccccagaagcatgcat 4863  T
Q  214 ccgtgtgtcttgcattt 230  Q
    |||||||||||||||||    
T  4862 ccgtgtgtcttgcattt 4846  T

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Target: chr2 (Bit Score: 91; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 25101825 - 25101607
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    ||||||||| ||| |||||||||| ||||||||||||||  ||| ||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  25101825 catcatcatgaagggaggttatacagtttacctttttccgggctgttgtcgaggcatgaaaaaactttgtatttctgtcgccatccttataccagtgagc 25101726  T
Q  112 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagcttgc 211  Q
    |||||||| |||| ||||||||||||||||||||||||  |  | ||||| |  ||||||||| |||| |||||   |||||||||| | || ||| | |    
T  25101725 tttagcacgttgacgccaataggcatcgtcttgggacattaagctttgcatgcatttcctaaggtcaagcatgcggttttggtcctccccagaagcatac 25101626  T
Q  212 agccgtgtgtcttgcattt 230  Q
    || ||| ||||||||||||    
T  25101625 agtcgtttgtcttgcattt 25101607  T

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Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 8563159 - 8562975
Alignment:
Q  14 tcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctt 113  Q
    ||||| ||||||||| |||| || |||||||| |||| || | ||||||| ||||||||||||||||||||||| || |||||||| ||| |||||| ||    
T  8563159 tcatcgtcaagagagtttatgcgatttaccttcttccgagttgttgccgaggcatgaaaaaactttgtatttctgtcaccatccttatactagtgagttt 8563060  T
Q  114 tagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 198  Q
    |||||| |||| |||||||||||||||||||||| ||||  |||||||   |||||| |||||||| ||||| |||||| |||||    
T  8563059 tagcacgttgacgccaataggcatcgtcttgggatagcaatcgttgcatacgtttccgaagctcaaccatgcgagtttgatcctc 8562975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 6009013 - 6009199
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    |||||||||||||||| |||||||| |||||||| || | |||  ||||||| || ||||||||||| ||||| |  || |||| ||| ||||| || |     
T  6009013 catcatcatcaagagaagttatacgatttaccttctttcgagccgttgccgaagcgtgaaaaaacttggtattacggtcaccatacttataccaatgggt 6009112  T
Q  112 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 198  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  6009113 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 6009199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 17783976 - 17783823
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  17783976 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 17783877  T
Q  112 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 161  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  17783876 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 17783823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 19085495 - 19085342
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  19085495 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 19085396  T
Q  112 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 161  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19085395 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19085342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 19092603 - 19092450
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  19092603 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 19092504  T
Q  112 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 161  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19092503 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19092450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 454 - 591
Target Start/End: Complemental strand, 18925875 - 18925736
Alignment:
Q  454 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 551  Q
    |||||||||||||| | ||||| ||||| ||||||||||||| || ||||||||| ||||||||  |||||||||||| ||||||||||| |||||  |     
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgc 18925776  T
Q  552 aaccttaccatataagtaaaaccagaatcaacttcaaaat 591  Q
    || ||||||| |||||||||  ||||||||||||||||||    
T  18925775 aatcttaccaaataagtaaaggcagaatcaacttcaaaat 18925736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 15993397 - 15993585
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  15993397 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 15993496  T
Q  112 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcac 200  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||||    
T  15993497 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctcac 15993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 14502883 - 14502697
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  14502883 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 14502784  T
Q  112 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 198  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  14502783 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 14502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 22289538 - 22289352
Alignment:
Q  12 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 111  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  22289538 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 22289439  T
Q  112 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 198  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  22289438 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 22289352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 28243804 - 28243619
Alignment:
Q  15 catcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagcttt 114  Q
    |||||||||||||||||||| | |||||||| || |||||| | ||||| || ||||||||||| ||||| |  |  |||||||| ||||| |||| |||    
T  28243804 catcatcaagagaggttataagatttaccttctttcaagctgtagccgaagcgtgaaaaaacttggtattacggttaccatccttataccaatgagtttt 28243705  T
Q  115 agcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcac 200  Q
     |||  |||| ||||||| ||||| | ||||||||| ||||||||||    |||||| ||||| ||||||| |  |||||||||||    
T  28243704 tgcatgttgaagccaataagcatcatattgggacagtagccgttgcattcttttccttagctcgaacatgcgaacttggtcctcac 28243619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1084 - 1117
Target Start/End: Complemental strand, 36795124 - 36795091
Alignment:
Q  1084 aattatcattaaatagtaaatcaaagagaaatat 1117  Q
    |||||||||||| |||||||||||||||||||||    
T  36795124 aattatcattaagtagtaaatcaaagagaaatat 36795091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 26904656 - 26904527
Alignment:
Q  32 atacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctttagcacattgatgccaat 131  Q
    ||||| |||||||| |||||||||   || ||| ||||||| || |||||||||| ||| |||||||||||||| ||||  ||||||| |||  ||||||    
T  26904656 atacgatttaccttcttccaagctgaagcagatacatgaaagaattttgtatttcgatcaccatccttgtaccaatgagtcttagcacgttgtcgccaat 26904557  T
Q  132 aggcatcgtcttgggacagcagccgttgca 161  Q
    ||||||| ||||||||||  ||||||||||    
T  26904556 aggcatcatcttgggacaaaagccgttgca 26904527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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