View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_low_20 (Length: 253)
Name: NF13492_low_20
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 26 - 241
Target Start/End: Complemental strand, 45546573 - 45546358
Alignment:
| Q |
26 |
ctactttatttgaatctattttggatgcagtgacattgacacatggaccagaagagcccactgagcctgagcctgagcctgagaagaagtctgttatgag |
125 |
Q |
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| T |
45546573 |
ctactttatttgaatctattttggatgaagtgacactgacacatggaccagaagagcccactaattctgagcctgagcctgagaagaagtctgttatgag |
45546474 |
T |
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| Q |
126 |
tagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactgaaactcagcat |
225 |
Q |
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| T |
45546473 |
tagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactgaaactcagcat |
45546374 |
T |
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| Q |
226 |
attcctgatgatgatg |
241 |
Q |
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| T |
45546373 |
attcctgatgatgatg |
45546358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 45551732 - 45551601
Alignment:
| Q |
106 |
gagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggac |
205 |
Q |
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|||||||| |||||| ||| || ||||||||||||||||| |||| ||| ||||| ||||| || || ||||| | ||| |||||||||||| ||||| |
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| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggac |
45551633 |
T |
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| Q |
206 |
atgacactgaaactcagcatattcctgatgat |
237 |
Q |
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| T |
45551632 |
ataacaatgaaattcagcatactcatgatgat |
45551601 |
T |
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