View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_low_22 (Length: 227)
Name: NF13492_low_22
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 48576367 - 48576161
Alignment:
| Q |
13 |
tgttagagaaagatagtacgtagttttttaatgaaataaaaatatggaagatatagannnnnnnnnn-ctatgcatatctcacgtaattgtgtccatgtg |
111 |
Q |
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| T |
48576367 |
tgttagagaaagatagta----gttttataatgaaataaaaatatggaagatatagatgttagtaattctatgcatatctcacgtaattgtgtccatgtg |
48576272 |
T |
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| Q |
112 |
cgtcacaataattaaatgttatttacttatgtttggcttatctcccaagctggaattgnnnnnnnntgtgtgatagtctttcagataagaataagaccag |
211 |
Q |
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| T |
48576271 |
cgtcacaataattaaatgttatttacttatgtttggcttatctcccaagctggaattgaaaaaaaatgtgtgatagtctttcagataagaataagaccag |
48576172 |
T |
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| Q |
212 |
gcagcccttct |
222 |
Q |
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||||||||||| |
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| T |
48576171 |
gcagcccttct |
48576161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 48544856 - 48544762
Alignment:
| Q |
127 |
atgttatttacttatgtttggcttatctcccaagctggaattgnnnnnnnntgtgtgatagtctttcagataagaataagaccaggcagcccttct |
222 |
Q |
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|||||||||| || |||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
48544856 |
atgttatttatttgtgtttggcttatttcccaagctggaattgaaaaaaa-tgtgtgatagtatcccagataagaataagaccaggcagcccttct |
48544762 |
T |
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