View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_low_3 (Length: 862)
Name: NF13492_low_3
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 813; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 20 - 852
Target Start/End: Complemental strand, 37834523 - 37833691
Alignment:
| Q |
20 |
atgtgaaccgtcaaaactccttggctattattcatcatggcaacatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcct |
119 |
Q |
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| T |
37834523 |
atgtgaaccgtcaaaactccttggctattattcatcatggcaacatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcct |
37834424 |
T |
|
| Q |
120 |
gagatacaatccaataacatggaaataaatagtacttctcaacaatatgaggtaatggggcaaccttttagcagcaccattactaaacggcatcagaatg |
219 |
Q |
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| T |
37834423 |
gagatacaatccaataacatggaaataaatagtacttctcaacaatatgaggtaatggggcaaccttttagcagcaccattactaaacagcatcagaatg |
37834324 |
T |
|
| Q |
220 |
gaagtcttatgcaaagtgtaggaaattggctggtattggattagttatacggcaaagaaatatgtgtcattctgatactggtctgtataagtactttagg |
319 |
Q |
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| T |
37834323 |
gaagtcttatacaaagtgtaggaaattggcaggtattggattagttatacggcaaagaaatatgtgtcattctgatactggtctgtataagtactttagg |
37834224 |
T |
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| Q |
320 |
caacgactatttctgcaagtaaaattgatacttcatctgcaattaatactcatttgtttgcattatttcatgtttatatagtatattgtttagttctaaa |
419 |
Q |
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| T |
37834223 |
caacgactatttctgcaagtaaaattgatacttcatctgcaattaatactcatttgtttgcattatttcatgtttatatagtatattgtttagttctaaa |
37834124 |
T |
|
| Q |
420 |
tcaggatctattgtctgtttcatataagcttttgctttatgtatgagtaactctttaacatttatctttttaattctctccatcaaaatcatttaattgc |
519 |
Q |
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| T |
37834123 |
tcaggatctattgtctgtttcatataagcttttgctttatgtatgagtaactctttaacatttatctttttaattctctccatcaaactcatttaattgc |
37834024 |
T |
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| Q |
520 |
taaaagctcaactttccatatgaacaggcaactggttttaattccttaaccagttggctcctagatggtgatcattcagtctcaacatgtgagattagtt |
619 |
Q |
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| T |
37834023 |
taaaagctcaactttccatatgaacaggcaactggttttaattccttaaccagttggctcctagatggtgatcattcagtctcaacatgtgagattagtt |
37833924 |
T |
|
| Q |
620 |
ataataacaacgaacaggaagaactgagaaagccatctacttctaatgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattcc |
719 |
Q |
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| T |
37833923 |
ataataacaacgaacaggaagaactgagcaagccatctacttctaatgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattcc |
37833824 |
T |
|
| Q |
720 |
ctcccaagatcactttgacgactgtgtactgtgcccatctattttctgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagac |
819 |
Q |
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| T |
37833823 |
ctcccaagatcactttgacgactgtgtactgtgcccatctattttctgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagac |
37833724 |
T |
|
| Q |
820 |
tcagaaattaaggtattctattttgatattctt |
852 |
Q |
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| T |
37833723 |
tcagaaattaaggtattctattttgatattctt |
37833691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 666 - 851
Target Start/End: Complemental strand, 37842306 - 37842121
Alignment:
| Q |
666 |
tgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatctattttc |
765 |
Q |
| |
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|||||||||||||||| |||||||||||||||| | |||||||||| |||||| ||||| | ||| | || ||| ||||||| |||||||||| | |
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| T |
37842306 |
tgcttattgggatacagttgaaagcgaaaatggtgttgacagtacaactattccttcccaggtgcacctggagaactatgtactggatccatctatttgc |
37842207 |
T |
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| Q |
766 |
tgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttgatattct |
851 |
Q |
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| T |
37842206 |
tatgatcagcttttcagcatcattgattattccccaagttggacatttgaagactcggaaattgaggtattctattttgatattct |
37842121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 50 - 352
Target Start/End: Complemental strand, 37843356 - 37843046
Alignment:
| Q |
50 |
ttcatcatggcaacatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcctgagatacaatccaataacatggaaataaat |
149 |
Q |
| |
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||||||||||||| ||||||| || |||| |||| |||| || | | || ||||||| ||||||||||| | | || |||||||||||||||| ||| |
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| T |
37843356 |
ttcatcatggcaagatatcttagaaaataaggctggaagtcataatgtgccttttcag---tcttttcctgaaaaagaacccaataacatggaaatcaat |
37843260 |
T |
|
| Q |
150 |
agtacttctcaacaatatgaggtaatggggcaaccttttagcagcaccattactaaacggcatcagaatggaagtcttatgca-----aag-tgtaggaa |
243 |
Q |
| |
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|||||||||||| ||||||| ||||||||||| ||| | || || ||||||||||| |||| ||||| ||||| |||| || ||| || ||||| |
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| T |
37843259 |
agtacttctcaaggatatgagacaatggggcaacatttaaccatcagcattactaaacagcatgagaatagaagttttatacaagctgaagctgaaggaa |
37843160 |
T |
|
| Q |
244 |
attggctggtattggattagttatac------ggcaaagaaatatgtgtcattctgatactggtctgtataagtactttaggcaacgactatttctgcaa |
337 |
Q |
| |
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|||||| ||||| || ||||||||| || |||||||| ||||||||||||||| |||||||| ||||||| ||||| ||| ||||| ||||||| |
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| T |
37843159 |
attggcaggtatgtgactagttatacttttatggtaaagaaatttgtgtcattctgatattggtctgtttaagtac-ttaggaaacaactatgtctgcaa |
37843061 |
T |
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| Q |
338 |
gtaaaattgatactt |
352 |
Q |
| |
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||||||||||||||| |
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| T |
37843060 |
gtaaaattgatactt |
37843046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 37843039 - 37842978
Alignment:
| Q |
377 |
ttgcattatttcatgtttatatagta-tattgtttagttctaaatcaggatctattgtctgtt |
438 |
Q |
| |
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||||||||||||||||| | |||||| |||| ||||||| ||||||||||||||| ||||||| |
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| T |
37843039 |
ttgcattatttcatgtt-acatagtaatattatttagttttaaatcaggatctatagtctgtt |
37842978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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