View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13492_low_4 (Length: 784)
Name: NF13492_low_4
Description: NF13492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13492_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 372 - 766
Target Start/End: Complemental strand, 443400 - 443005
Alignment:
| Q |
372 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaatgaataataaatttagggattgttatatat |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
443400 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaatgaatgataaatttagggattgttatatat |
443301 |
T |
|
| Q |
472 |
gatatgagtatatgactagtgcttaaaaactcagaaaccaaaattatagtttccttaaattgggta-ttagcacgacatacacacaagttactctctaat |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
443300 |
gatatgagtatatgactagtgcttaaaaactcagaaaccaaaattatagtttccttaaattgggtacttagcacgacatacacacaagttactctctaat |
443201 |
T |
|
| Q |
571 |
gcaattgagaaaactcaaacacaatctgaacaacaacatcaacaaaaatgttcccctagaccacaaagttgaacctgagagagtgacaaaaacaaggaac |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443200 |
gcaattgagaaaactcaaacacaatctgaacaacaacatcaacaagaatgttcccctagaccacaaagttgaacctgagagagtgacaaaaacaaggaac |
443101 |
T |
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| Q |
671 |
taccgaaggcagaagcttcatttgagaataataataatgaatgaattctacacagatggcagaaacatcctgctatgaattctacacagaagaagt |
766 |
Q |
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| T |
443100 |
taccgaaggcagaagcttcatttgagaataataataatgaatgaattctacacagatggcagaaacatcctgctatgaattctacacagaagaagt |
443005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 443724 - 443394
Alignment:
| Q |
15 |
catcatcactgtctgaatcatcaatttctataatctgcttcttgttctcaagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacata |
114 |
Q |
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| T |
443724 |
catcatcactgtctgaatcatcaatttctataatctgcttcttgttctcaagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacata |
443625 |
T |
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| Q |
115 |
atcataattaggcttaaactacctaaggtaagattttaaaacatgcatgtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443624 |
atcataattaggcttaaactacctaaggtaagattttaaaacatgcatgtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcattt |
443525 |
T |
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| Q |
215 |
gctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtcc |
312 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443524 |
gctgttttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtcc |
443425 |
T |
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| Q |
313 |
ctaaatatgtaaggacccataacattagtcc |
343 |
Q |
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| T |
443424 |
ctaaatatgtaaggacccataacattagtcc |
443394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 465379 - 465466
Alignment:
| Q |
197 |
gcggtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||| |||||||||||||| |||||| |
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| T |
465379 |
gcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaa |
465466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 444754 - 444670
Alignment:
| Q |
200 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaa |
282 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||| |
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| T |
444754 |
gtgcaaatagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
444670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 615
Target Start/End: Original strand, 29571722 - 29571791
Alignment:
| Q |
549 |
tacacacaagttactctctaatgcaat---tgagaaaactcaaacacaatctgaacaacaacatcaacaa |
615 |
Q |
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||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
29571722 |
tacacacaagttactttctaatgcaataattgagcaaactcaaacacaatctgaacaagaacctcaacaa |
29571791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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