View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13493_high_1 (Length: 497)
Name: NF13493_high_1
Description: NF13493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13493_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 51153503 - 51153970
Alignment:
| Q |
11 |
atcatcatgcaagagtctggtggttcaaaatatgaaggattcttcaagttgggtggaatataagaatgatctatttgatgattatggaggaatggattcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153503 |
atcatcatgcaagagtctggtggttcaaaatatgaaggattcttcaagttgggtggaatataagaatgatctatttgatgattatggaggaatggattcg |
51153602 |
T |
|
| Q |
111 |
ggaagtcatttattaaccttaggaaggttatatgcatgggaaaagaaattgtttgaggaggttaaggtaaggttaattttattattgcttttgttcgaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153603 |
ggaagtcatttattaaccttaggaaggttatatgcatgggaaaagaaattgtttgaggaggttaaggtaaggttaattttattattgcttttgttcgaat |
51153702 |
T |
|
| Q |
211 |
ctgtattttctgtttatgacgaaatgaaattgcttgaatgtgtattctctaaaacaacaatgtgttagtgcttaacttctagtgtggccttgttttgttc |
310 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153703 |
ccgtattttctgtttatgacgaaatgaaattgcttgaatgtgtattctctaaaataacaatgtgttagtgcttaacttctagtgtggccttgttttgttc |
51153802 |
T |
|
| Q |
311 |
cttgacatatcttgcaaacatttaatgaattccttgccttaggctggagatagcacgcggaaaaattatgagaaaaaatgtgctcagttgagaaataaga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153803 |
cttgacatatcttgcaaacatttaatgaattccttgccttaggctggagatagcacgcggaaaaattatgagaaaaaatgtgctcagttgagaaataaga |
51153902 |
T |
|
| Q |
411 |
atgttagaggagatgatgaattaagcatggacaagactagagctgatatgaaagatctgtatgctggg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153903 |
atgttagaggagatgatgaattaagcatggacaagactagagctgatatgaaagatctgtatgctggg |
51153970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University