View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13493_high_2 (Length: 377)
Name: NF13493_high_2
Description: NF13493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13493_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 8389374 - 8389161
Alignment:
| Q |
146 |
cagtgttatagaacatgtcattttaatcacacttcaacttttcaccagacacataaatttaatccctggactcgaagtgcaagaattaccacacttctga |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8389374 |
cagtgttatagaacatgtcattttaatcacacttcaacttttcaccagacacataaatttaatccctggactcgaagtgcaagaattaccacacttctga |
8389275 |
T |
|
| Q |
246 |
ctatctttccagtagatttaaaaacatttaccagtcttcataagatcctacagaagatacagaacatcagaattctccaatcaaatagttatgccaattc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8389274 |
ctatctttccagtagatttaaaaacatttaccagtcttcataagatcctacagaagatacagaacatcataattctccaatcaaatagttatgccaattc |
8389175 |
T |
|
| Q |
346 |
ctaaagccaaggac |
359 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8389174 |
ctaaagccaaggac |
8389161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 8389509 - 8389405
Alignment:
| Q |
11 |
acaatatcacgacccatgtaattgtaagacttcctaaatttacagccaccacctcgctgtgttttctggacaggaaactattcaatgaaacaagagtaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8389509 |
acaatatcacgacccatgtaattgtaagacttcctaaatttacagccaccacctcgctgtgttttctggacaggaaactattcaatgaaacaagagtaat |
8389410 |
T |
|
| Q |
111 |
tgagt |
115 |
Q |
| |
|
||||| |
|
|
| T |
8389409 |
tgagt |
8389405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 12209629 - 12209678
Alignment:
| Q |
10 |
aacaatatcacgacccatgtaattgtaagacttcctaaatttacagccac |
59 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||||||||||| |||| |
|
|
| T |
12209629 |
aacaatatcacgacccttgtaattaaaagtcttcctaaatttacaaccac |
12209678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 12454057 - 12454106
Alignment:
| Q |
10 |
aacaatatcacgacccatgtaattgtaagacttcctaaatttacagccac |
59 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||||||||||| |||| |
|
|
| T |
12454057 |
aacaatatcacgacccttgtaattaaaagtcttcctaaatttacaaccac |
12454106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University