View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13494_high_1 (Length: 410)
Name: NF13494_high_1
Description: NF13494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13494_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 3932848 - 3932463
Alignment:
| Q |
18 |
cttccaacactgtgatgtgtctcaccaccccaagcatatctaggttctgcaacagatcgcttcacacataccctatcaccaatctgtaagacaaatacaa |
117 |
Q |
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| T |
3932848 |
cttccaacactgtgatgtgtctcaccaccccaagcatatctaggttctgcgacagatcgcttcacacataccctatcaccaatctgtaagacaaatacaa |
3932749 |
T |
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| Q |
118 |
atcatgtaacaaaaataggacaaaaatattaagtcagagaattaaaataatctacattcctcttaccctaaaaggaggaacatgctcaatctcctctggt |
217 |
Q |
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| T |
3932748 |
atcatgtaacaaaaataggacaaaaatattaagtcagagaattaaaataatctacattcctcttaccctaaaaggaggaacatgctcaatctcctctggt |
3932649 |
T |
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| Q |
218 |
tcacaatgccatggattttgaacatagctcaactcgactaacaaactactgtcaggtcggatacaatatacaatgccaatggttcccggtaccacatttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3932648 |
tcacaatgccatggattttgaacatagctcaactcgactaacaaactactgtcaggtcggatacaatatacaatgccaatggttcctggtaccacatttc |
3932549 |
T |
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| Q |
318 |
ctaatccatgctttgaagttgtaagggttggacgaacacgaacccaatctccaaccttgaactcctcaacccgttccatctctgct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932548 |
ctaatccatgctttgaagttgtaagggttggacgaacacgaacccaatctccaaccttgaactcctcaacccgttccatctctgct |
3932463 |
T |
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