View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13494_low_4 (Length: 255)
Name: NF13494_low_4
Description: NF13494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13494_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 6808094 - 6807861
Alignment:
| Q |
18 |
atgaggaacgtttggttctcactgtgcactcactttaccccattaccatatat--ttaagtgatattacaagattatcattgcacggtttcatcttatct |
115 |
Q |
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| T |
6808094 |
atgaggaacgtttggttctcactgtgcactcactttaccccattaccatatatatttaagtgatattacaagattatcattgcacggtttcatcttatct |
6807995 |
T |
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| Q |
116 |
tattgatcaagtgcaatcttgtcccaaaagggattaaagcatgtttcattcattctccatcgtaacaaatacagactcgagttaaagaatctaattacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6807994 |
tattgatcaagtgcaatcttgtcccaaaagggattaaagcatgtttcattcattctccatcgtaacaaatacagactcaagttaaagaatctaattacct |
6807895 |
T |
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| Q |
216 |
caccccacttatttgtcatgttggattcatctca |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6807894 |
caccccacttatttgtcatgttggattcatctca |
6807861 |
T |
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