View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13494_low_6 (Length: 246)
Name: NF13494_low_6
Description: NF13494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13494_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2946880 - 2946641
Alignment:
| Q |
1 |
cttttggtggaggcatgagagtttgtgttgggacagaatttgctaaggttcagatggcagtttttcttcattgcttggtaacaaagtataggtaataagc |
100 |
Q |
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| T |
2946880 |
cttttggtggaggcatgagattttgtgttgggacagaatttgctaaggttcagatggcagtttttcttcattgcttggtaacaaagtataggtaataagc |
2946781 |
T |
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| Q |
101 |
aatgtcatgcatggaaagagactttaaactgaaacaatgtaccttctttaacgcttgaatttaatttagaatgcggagtagtctctttaacgtctgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946780 |
aatgtcatgcatggaaagagactttaaactgaaacaacgtaccttctttaacgcttgaatttaatttagaatgcggagtagtctctttaacgtctgaata |
2946681 |
T |
|
| Q |
201 |
tttcaggtggcgacccatcaaaggagggaatattcttcga |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
2946680 |
tttcaggtggcgacccatcaaaggagggaatattgttcga |
2946641 |
T |
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