View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13494_low_9 (Length: 207)
Name: NF13494_low_9
Description: NF13494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13494_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 12187327 - 12187449
Alignment:
| Q |
69 |
cgttccaaagttttttcaagttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactcca |
168 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12187327 |
cgttccaaagtttttccaggttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactcca |
12187426 |
T |
|
| Q |
169 |
ttcaaaacttcttaagttgttag |
191 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
12187427 |
ttcaaaacttcttaagttattag |
12187449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 12431755 - 12431877
Alignment:
| Q |
69 |
cgttccaaagttttttcaagttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactcca |
168 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12431755 |
cgttccaaagtttttccaggttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactcca |
12431854 |
T |
|
| Q |
169 |
ttcaaaacttcttaagttgttag |
191 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
12431855 |
ttcaaaacttcttaagttattag |
12431877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 9393175 - 9393296
Alignment:
| Q |
70 |
gttccaaagttttttcaagttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactccat |
169 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9393175 |
gttccaaagtttttccatgttgctatatggaaggcgaagttcaacaagattccatggagaaaaatttgatggtagagaatttaatggatatgcactccat |
9393274 |
T |
|
| Q |
170 |
tcaaaacttcttaagttgttag |
191 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
9393275 |
ccaaaacttctcaagttgttag |
9393296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 12175843 - 12175963
Alignment:
| Q |
71 |
ttccaaagttttttcaagttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactccatt |
170 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12175843 |
ttccaaagtttttccaggttgctatagggaaggtaaagttcaacaagattcgatggagaaaaatttgatggtagagaatttaatggatatgcactccatc |
12175942 |
T |
|
| Q |
171 |
caaaacttcttaagttgttag |
191 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
12175943 |
caaaacttcgcaagttgttag |
12175963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 12420271 - 12420391
Alignment:
| Q |
71 |
ttccaaagttttttcaagttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactccatt |
170 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12420271 |
ttccaaagtttttccaggttgctatagggaaggtaaagttcaacaagattcgatggagaaaaatttgatggtagagaatttaatggatatgcactccatc |
12420370 |
T |
|
| Q |
171 |
caaaacttcttaagttgttag |
191 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
12420371 |
caaaacttcgcaagttgttag |
12420391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27524404 - 27524342
Alignment:
| Q |
1 |
cgctatgaaaggtactcttatgcatagagacagctagttgcaaatgatcctgagtcacaggtt |
63 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27524404 |
cgctatgaaaggtactcctatgcagagagacagctagttgcaaatgattctgagtcacaggtt |
27524342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 42264946 - 42265068
Alignment:
| Q |
69 |
cgttccaaagttttttcaagttgctatatggaaggtgaagttcaacaagattccatggagaaaaatttgatggtagataatttaatggatatgcactcca |
168 |
Q |
| |
|
||||||||||||||| || |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
42264946 |
cgttccaaagtttttccaggttgttatatggaatgcgaagttcaacaagattccatggagaaaaatttgatggtagagaatttaatggatacgcattcca |
42265045 |
T |
|
| Q |
169 |
ttcaaaacttcttaagttgttag |
191 |
Q |
| |
|
|||||| ||||| || ||||||| |
|
|
| T |
42265046 |
ttcaaagcttctcaaattgttag |
42265068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University