View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_high_11 (Length: 362)
Name: NF13495_high_11
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 1949623 - 1949984
Alignment:
| Q |
1 |
tcagaaagctccgcaaacgctgcacaggtatcatgatcataataactaacaggccccttccgagcattcttcttcgcaccattcatagggcaatgaaaca |
100 |
Q |
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| T |
1949623 |
tcagaaagctccgcaaacgctgcacaggtatcatgatcataataactaacaggccccttccgagcattcttcttcgcaccattcatagggcaatgaaaca |
1949722 |
T |
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| Q |
101 |
aagcagacatagggttccattctgaagaagacccattgatatccttaaaattcccactaaaccctaaaggaaaatgcccaaagctacagaaataaccacc |
200 |
Q |
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| T |
1949723 |
aagcagacatagggttccattctgaagaagacccattgatatccttaaaattcccactaaaccctaaaggaaaatgcccaaagctacagaaataaccacc |
1949822 |
T |
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| Q |
201 |
agcctctccctnnnnnnngtcttcttcggtcacctccggtggtgcccgtacaaccactgcatgaaaacccctcttacaattctgacaccggattgtacaa |
300 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1949823 |
agcctctccctcaccaccgtcttcttcagtcacctccggtggtgcccgtacaaccactgcatgaaaacccctcttacaattctgacaccggagtgtacaa |
1949922 |
T |
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| Q |
301 |
tcaacataaaccttaggatactcaaacatgccataacagtaaggacaagccgtccagaaagt |
362 |
Q |
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| T |
1949923 |
tcaacataaaccttaggatactcaaacatgccataacagtaaggacaagccgtccagaaagt |
1949984 |
T |
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