View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13495_high_12 (Length: 358)
Name: NF13495_high_12
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 43862181 - 43862516
Alignment:
| Q |
8 |
catcaaaataatcattctattagcaagtggaataccaggacaaattctccttccagcaccaaaaggtaaatactcaaaatctctccctttaaaatctaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862181 |
catcaaaataatcattctattagcaagtggaataccaggacaaattctccttccggcaccaaaaggtaaatactcaaaatctctccctttaaaatctaca |
43862280 |
T |
|
| Q |
108 |
ttcgaattaagaaacctttctggttgaaacaacaacggatcctcccaaaactcggggtttcttcctatagaccatgcatttattaaaacttggtttcctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862281 |
ttcgaattaagaaacctttctggttgaaacaacaacggatcctcccaaaactcggggtttcttcctatagaccatgcatttattaaaacttggtttcctt |
43862380 |
T |
|
| Q |
208 |
tgtgaattgtgtaaccatttatttcaacattatttgctgcaatataaggtaagagaagtggtacaggaggatgaagcctaaggttttctttgactattgc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43862381 |
tgtgaattgtgtaaccatttatttcaacattatttgctgcaatataaggtaagagaagtggtacaggaggatgaagcctaagggtttctttgactattgc |
43862480 |
T |
|
| Q |
308 |
ttggatgtatggaagtgaaggaatgtctgattcttt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862481 |
ttggatgtatggaagtgaaggaatgtctgattcttt |
43862516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 22986262 - 22986307
Alignment:
| Q |
42 |
ccaggacaaattctccttccagcaccaaaaggtaaatactcaaaat |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
22986262 |
ccaggacaaattctccttccagcaccaaatggaatgtactcaaaat |
22986307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University