View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_high_18 (Length: 250)
Name: NF13495_high_18
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_high_18 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 27416113 - 27415874
Alignment:
| Q |
11 |
agaatatgcgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgt |
110 |
Q |
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| T |
27416113 |
agaatatgtgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgt |
27416014 |
T |
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| Q |
111 |
aagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaattt |
210 |
Q |
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| T |
27416013 |
aagttctgaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaattt |
27415914 |
T |
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| Q |
211 |
caatctaatggtcttttttcccatctttacaatttgataa |
250 |
Q |
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| T |
27415913 |
caatctaatggtcttttttcccatctttacaatttgataa |
27415874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 27413115 - 27412989
Alignment:
| Q |
47 |
ttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagagga |
146 |
Q |
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| T |
27413115 |
ttcagaataccaagtcattttttaa-ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaaga |
27413017 |
T |
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| Q |
147 |
gctgcttgagtagtcgaattcgttttca |
174 |
Q |
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| T |
27413016 |
gttacttgaatagtcgaattcgttttca |
27412989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 27569734 - 27569880
Alignment:
| Q |
40 |
gaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaag |
139 |
Q |
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| T |
27569734 |
gaaatttctcaggataccaagtccctttttttcttatagcaagcaatgttacttatataatcatatgcagtatgttcttaagtgcaataaaccaaaaaca |
27569833 |
T |
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| Q |
140 |
tagaggagctgcttgagtagtcgaattcgttttcactaaacaaaata |
186 |
Q |
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| T |
27569834 |
gagaggagatatttgagtagtcgaattcattgtcattaaacaaaata |
27569880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 27423642 - 27423546
Alignment:
| Q |
71 |
tcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc |
167 |
Q |
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| T |
27423642 |
tcttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattc |
27423546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 27565711 - 27565782
Alignment:
| Q |
114 |
ttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaat |
185 |
Q |
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| T |
27565711 |
ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaat |
27565782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 27426187 - 27426120
Alignment:
| Q |
117 |
ttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaa |
184 |
Q |
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| T |
27426187 |
ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaa |
27426120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27420748 - 27420676
Alignment:
| Q |
119 |
aagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatata |
193 |
Q |
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| T |
27420748 |
aagtgcaataaacataaaca-tagaggatcagcttgagtagtcgaattcgttttcattaaacaaaa-aatatata |
27420676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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