View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13495_high_22 (Length: 239)
Name: NF13495_high_22
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_high_22 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 27414727 - 27414947
Alignment:
| Q |
19 |
aagggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctactttgtaacacaactaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27414727 |
aagggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctactctgtaacacaactaag |
27414826 |
T |
|
| Q |
119 |
gaaaaattaaagacagtggattggtgaaagaaacttgatgtttgttgctatagctaatccaatatgtttgttcccacatctttcttctaaatgacaaggc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27414827 |
gaaaaattaaagacagtggattggtgaaagaaacttgatgtttgttgctatagctaatccaatatgtttgttcccacatctttcttctaaatgacaaggc |
27414926 |
T |
|
| Q |
219 |
aactaatatacatatacctgc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27414927 |
aactaatatacatatacctgc |
27414947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 27422376 - 27422530
Alignment:
| Q |
23 |
gatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctactttgtaacacaactaaggaaa |
122 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
27422376 |
gatcacatggtattgtcttatagaagtcattttcaagg-attagatgaagttaaatggaagaacatgcaaataccccactttgtaacacaa---aggaaa |
27422471 |
T |
|
| Q |
123 |
aattaaagacagtggattggtgaaagaaacttgatgtttgttgctatagctaatccaat |
181 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
27422472 |
aattaaagacagtggattgatgaaagaaacctgatgttttctgctatagctaatccaat |
27422530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 27424962 - 27425094
Alignment:
| Q |
33 |
tattgtcctatagaagtcattttcaa--actattagatgaagctaaatggaagaacatgcacataccctactttgtaacacaactaaggaaaaattaaag |
130 |
Q |
| |
|
||||||| |||||||||||||||||| | || ||||||||| ||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
27424962 |
tattgtcttatagaagtcattttcaaggatta-tagatgaagttaaatggaagaacattcaaataccccactttgtaacacaactatggaaaaattaaag |
27425060 |
T |
|
| Q |
131 |
acagtggattggtgaaagaaacttgatgtttgtt |
164 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
27425061 |
acagtggattggtgaaagaaacctgatgtttgtt |
27425094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 27566945 - 27566860
Alignment:
| Q |
20 |
agggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctactttgt |
106 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
27566945 |
agggatcacatggcattgtatcatggaagtcattttcaagc-attagatgaagataaatggaagaacatgcacataccccactttgt |
27566860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 27571309 - 27571228
Alignment:
| Q |
19 |
aagggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctac |
101 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||| || ||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
27571309 |
aagggttcacatggtattgtcttatagaggtcattttc-aaggattagatgaagctaaatataagaacatgcaaatactctac |
27571228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 27425144 - 27425187
Alignment:
| Q |
193 |
cacatctttcttctaaatgacaaggcaactaatatacatatacc |
236 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
27425144 |
cacatctttcttctaattgacaaggaaactaatatacatatacc |
27425187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 27566836 - 27566777
Alignment:
| Q |
122 |
aaattaaagacagtggattggtgaaagaaacttgatgtttgttgctatagctaatccaat |
181 |
Q |
| |
|
|||||||||||| || | ||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
27566836 |
aaattaaagacaatgcaatggtgaaagaaacctggaatttgttgctatagctaatccaat |
27566777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 27411893 - 27411929
Alignment:
| Q |
69 |
gaagctaaatggaagaacatgcacataccctactttg |
105 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
27411893 |
gaagataaatggaagaaaatgcacataccctactttg |
27411929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University