View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_high_4 (Length: 597)
Name: NF13495_high_4
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_high_4 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Complemental strand, 32948067 - 32947492
Alignment:
| Q |
19 |
attcttccacatttcttatgtatccaa-tagaatataatatcaaatggaagaaattaaggtaaataaactaatgaatcggggtagagtgtcacctctgtt |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32948067 |
attcttccacatttcttatgtatccaaatagaatataatatcaaatggaagaaattaaggtaaataaactaatgaatcggggtagagtgtcacctctgtt |
32947968 |
T |
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| Q |
118 |
tggaaccattaactactaaattatccagatagttggaataatagtactcagct--tagtaggaaagcctaaaacaacttttccatatctatcataaactt |
215 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32947967 |
tggaaccattaactacttaattatccagatagttggaataatagtactcagcttatagtaggaaagcctaaaacaacttttccatatctatcataaactt |
32947868 |
T |
|
| Q |
216 |
cttttaaacaatatcaacctttatgttcaataaaaattacaagcgactgtcctcgtgagcatatctcagttggcagagacatgtataaccccagacaacc |
315 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||| | |||||||||| | ||| |
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| T |
32947867 |
cttttaaacaatatcaacc-ttatgttcaataaaaattacaagcgactgtccccttaagcatagctcagttggcagagacacgcataaccccaggcgacc |
32947769 |
T |
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| Q |
316 |
cacttatttttgaaaaatgtgaattatagtcactagactaccagacc------nnnnnnnnnntattacaagcgactgtgtttaattagtacatcatcag |
409 |
Q |
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|||||||| |||||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |
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| T |
32947768 |
cacttattcttgaaaaaggtgaattataatcactagactaccataccaaaaaaagaaaaaaaatattacaagcgactgtgtttaattagtacagcatcag |
32947669 |
T |
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| Q |
410 |
cattgttaatagcttttgttgcacgtacatagattatcaattctttttaccaggcacattatcatgacttatacgaatatccttnnnnnnntcacttata |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32947668 |
cattgttaatagcttttgttgcacgtacatagattatcaattctttttaccaggcacattatcatgacttatacgaatatccttaaaaaaatcacttata |
32947569 |
T |
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| Q |
510 |
cgaataggcttttgaacaattccaaccttacgttcaataaatattcatcttttaagttgtatttatatattcttgga |
586 |
Q |
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| T |
32947568 |
cgaataggcttttgaacaattccaaccttacgttcaacaaatattcatcttttaagttgtatttatatatttttgga |
32947492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 24160630 - 24160595
Alignment:
| Q |
263 |
tgtcctcgtgagcatatctcagttggcagagacatg |
298 |
Q |
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| T |
24160630 |
tgtcctcgtgagcataactcagttggcagagacatg |
24160595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 32677391 - 32677444
Alignment:
| Q |
307 |
cagacaacccacttatt---tttgaaaaatgtgaattatagtcactagactacc |
357 |
Q |
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| T |
32677391 |
cagacaccccacttattcactttgaaaaaggtgaattatagtcactagactacc |
32677444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 35352442 - 35352385
Alignment:
| Q |
302 |
aaccccagacaacccacttattt---ttgaaaaatgtgaattatagtcactagactac |
356 |
Q |
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| T |
35352442 |
aaccccagacaccccacttattcaccttgaaaaatgtgaattctagtcactagactac |
35352385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 25062 - 25028
Alignment:
| Q |
264 |
gtcctcgtgagcatatctcagttggcagagacatg |
298 |
Q |
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| T |
25062 |
gtccccgtgagcatatctcagttggcagagacatg |
25028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 24572953 - 24572915
Alignment:
| Q |
263 |
tgtcctcgtgagcatatctcagttggcagagacatgtat |
301 |
Q |
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||||| |||||||||| |||||||||||||||||||||| |
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| T |
24572953 |
tgtccccgtgagcatagctcagttggcagagacatgtat |
24572915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 356
Target Start/End: Complemental strand, 30668193 - 30668165
Alignment:
| Q |
328 |
aaaaatgtgaattatagtcactagactac |
356 |
Q |
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| T |
30668193 |
aaaaatgtgaattatagtcactagactac |
30668165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 15640545 - 15640513
Alignment:
| Q |
264 |
gtcctcgtgagcatatctcagttggcagagaca |
296 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
15640545 |
gtccccgtgagcatatctcagttggcagagaca |
15640513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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