View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13495_high_7 (Length: 411)
Name: NF13495_high_7
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 45 - 411
Target Start/End: Complemental strand, 33137514 - 33137148
Alignment:
| Q |
45 |
aaatttcttcattcattttttgcatgtgaacatgaacaaacaagaacagaacattaaaaaataaacatttttgtttggtttttgatgatgcagataataa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33137514 |
aaatttcttcattcattttttgcatgtgaacatgaacaaacaagaacagaacattaaaaaaaaaacaattttgtttggtttttgatgatgcagataataa |
33137415 |
T |
|
| Q |
145 |
gagcaatatcaggttgtagaagagaagcagttgggctagaagaagagaatcgtgctttaatggaaacaaggattcaaccactttcattacgttttgatga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33137414 |
gagcaatatcaggttgtagaagagaagcagttgggctagaagaagagaatcgtgctttaatggaaacaaggattcagccactttcattacgttttgatga |
33137315 |
T |
|
| Q |
245 |
aagagtttcaattgaatcaaaactaaacggtttcaacggtttcagaggtgttttatacgcaatgagaaacgtgagttcgttgttattgatgatcctctta |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33137314 |
aagagtttcaattgaatcaaaactaaacggtttcaacggtttcagaggtgttttatacgcaatgagaaacgtgagttcgttgttattaatgatcctctta |
33137215 |
T |
|
| Q |
345 |
tacggtttggtctattgttatccagaatcatcggatttgatctttggagggtacgaggattacgaat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
33137214 |
tacggtttggtctattgttatccagaatcatcggatttgatcttcggagggtacgaggattatgaat |
33137148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 25259109 - 25258982
Alignment:
| Q |
183 |
gaagaagagaatcgtgctttaatggaaacaaggattcaaccactttcattacgttttgatgaaagagtttcaattgaatcaaaactaaacggtttcaacg |
282 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| | |||| |||||| | |||| || |||||||| || | |||||||| |||||||||||||||| |
|
|
| T |
25259109 |
gaagaagaaaaccgtgcattgatggaaacaagagtccaactactttctctgtgtttcgacgaaagagtatccgtcgaatcaaagctaaacggtttcaacg |
25259010 |
T |
|
| Q |
283 |
gtttcagaggtgttttatacgcaatgag |
310 |
Q |
| |
|
| |||||||| ||||||||||||||||| |
|
|
| T |
25259009 |
ggttcagaggagttttatacgcaatgag |
25258982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 25322899 - 25322772
Alignment:
| Q |
183 |
gaagaagagaatcgtgctttaatggaaacaaggattcaaccactttcattacgttttgatgaaagagtttcaattgaatcaaaactaaacggtttcaacg |
282 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| | |||| |||||| | |||| || |||||||| || | |||||||| |||||||||||||||| |
|
|
| T |
25322899 |
gaagaagaaaaccgtgcattgatggaaacaagagtccaactactttctctgtgtttcgacgaaagagtatccgtcgaatcaaagctaaacggtttcaacg |
25322800 |
T |
|
| Q |
283 |
gtttcagaggtgttttatacgcaatgag |
310 |
Q |
| |
|
| |||||||| ||||||||||||||||| |
|
|
| T |
25322799 |
ggttcagaggagttttatacgcaatgag |
25322772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University