View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13495_low_10 (Length: 393)
Name: NF13495_low_10
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 1950323 - 1950676
Alignment:
| Q |
17 |
catcatccaaagctttcttatgtggatttgagaaaatggaccaagcatcatgaacaagagagaaagcatgagcagcataagcaaacgggttacggttcgg |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1950323 |
catcatacaaagctttcttatgtggatttgagaaaatggaccaagcatcatgaacaagagagaaagcatgagcagcataagcaaacgggttacggttcgg |
1950422 |
T |
|
| Q |
117 |
gtcaagtagaatagcgagacggcgatattgatcggcgatatactcaatattctgagtataacgaaggatttgaagaatggcgtaataatcgatttgttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1950423 |
gtcaagtagaatagcgagacggcgatattgatcggcgatatactcaatattctgagtataacgaaggatttgaagaatggcgtaataatcgatttgttct |
1950522 |
T |
|
| Q |
217 |
ttgattctagcttcaccggctaagagagtgtcgataaccgcaagaagaagttcagtggcttcgaatctcgggtcggattcttgtgcccgaatggcgaagg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1950523 |
ttgattctagcttcaccggctaagagagtgtcgataaccgcaagaagaagttcagtggcttcgaatctcgggtcggattcttgtgcccgaatggcgaagg |
1950622 |
T |
|
| Q |
317 |
aacgggcgccgtgtaagtcacgcgcgctgaggagtttgttggctgtgtataacc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1950623 |
aacgggcgccgtgtaagtcacgcgcgctgagtagtttgttggctgtgtataacc |
1950676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 37184035 - 37183942
Alignment:
| Q |
55 |
gaccaagcatcatgaacaagagagaaagcatgagcagcataagcaaacgggttacggttcgggtcaagtagaatagcgagacggcgatattgat |
148 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | | |||| || |||||||| || |||||||| || | ||| || |||||||| |||| |
|
|
| T |
37184035 |
gaccaagcatcatgaacaagggagaaagcatgaccggagaaagcgaatgggttacgattagggtcaaggaggagagcaagtcggcgatactgat |
37183942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University