View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_low_11 (Length: 378)
Name: NF13495_low_11
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 49254891 - 49254538
Alignment:
| Q |
17 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaataca |
116 |
Q |
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| T |
49254891 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaataca |
49254792 |
T |
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| Q |
117 |
cgccatgttatgcttcttgaac---caccctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------ta |
200 |
Q |
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| T |
49254791 |
ccccatgttatgcttcttgaaccagcaccctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagtta |
49254692 |
T |
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| Q |
201 |
cattaatattgggatttgaatacgttggtggaagttgagattattattgaaattggaataaacaatgttcagttcacatgtgatgctcgaacgaacnnnn |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254691 |
cattaatatt-ggatttgaatacgttggtggaagttgagattattattgaaattggaataaacaatgttcagttcacatgtgatgctcgaacgaactttt |
49254593 |
T |
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| Q |
301 |
nnnaatgtaatagtttgctccgaacacggaatgaagagaaagcatcggctaatat |
355 |
Q |
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| T |
49254592 |
tttaatgtaatagtttgctccgaacacggaatgaagagaaagcatcggctaatat |
49254538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 49267149 - 49266985
Alignment:
| Q |
21 |
atcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgcc |
120 |
Q |
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| T |
49267149 |
atcattgaaataatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacacccc |
49267050 |
T |
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| Q |
121 |
atgttatgcttcttgaaccaccctctgtgtctttctctaacaaacctttatccatattttctagc |
185 |
Q |
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| T |
49267049 |
atgttatgcttcttgaatcaccttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 49271559 - 49271447
Alignment:
| Q |
17 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaataca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| ||| |
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| T |
49271559 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacaca |
49271460 |
T |
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| Q |
117 |
cgccatgttatgc |
129 |
Q |
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| T |
49271459 |
ccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 49274685 - 49274761
Alignment:
| Q |
17 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274685 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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