View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_low_18 (Length: 336)
Name: NF13495_low_18
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 36698305 - 36698502
Alignment:
| Q |
1 |
aaaaattcactatacccttacccattgaaattacgttatccgttcttg------atctaaaaagaaaaagctactcttaagagtattnnnnnnnttagtt |
94 |
Q |
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| T |
36698305 |
aaaaattcactatacccttacccattgaaatcacgttacctgttcttgttcttgatctaaaaa-aaaaagctactcttaagagtattaaaaaaactactt |
36698403 |
T |
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| Q |
95 |
ttaattcttcaaatcccagttgttgctatactacttttgatgcattccaatccaatttcatacgagaaatagagaaagaacgatatgcagaagctattc |
193 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36698404 |
ttaattcttcaaatcccagttgttgctctactacttttgatgcattccaatccaatttcatacgagaaatagagaaagaaggatatgcagaagctattc |
36698502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 36698571 - 36698671
Alignment:
| Q |
194 |
aaaatgctagtgcataattaaatctgaatgatatagtttgatcc-aaggtgaataatcaatcctctcatctctcattttaagaggt--tctcatttgaaa |
290 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
36698571 |
aaaatgctagtgcataattaaatctgaatgatagagtttcatccaaaggtgaataatcaatcctctcatctctcattttaagacgtcctctcatttgaaa |
36698670 |
T |
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| Q |
291 |
t |
291 |
Q |
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| T |
36698671 |
t |
36698671 |
T |
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