View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13495_low_2 (Length: 687)

Name: NF13495_low_2
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13495_low_2
NF13495_low_2
[»] chr7 (3 HSPs)
chr7 (12-428)||(48883228-48883644)
chr7 (570-670)||(48883035-48883136)
chr7 (460-555)||(48883121-48883218)
[»] chr8 (5 HSPs)
chr8 (191-280)||(12199898-12199987)
chr8 (191-280)||(12444326-12444415)
chr8 (191-280)||(15348453-15348542)
chr8 (191-280)||(12194892-12194981)
chr8 (191-280)||(12439320-12439409)
[»] chr4 (24 HSPs)
chr4 (191-292)||(7238118-7238219)
chr4 (151-319)||(7904587-7904754)
chr4 (191-291)||(48170987-48171087)
chr4 (160-316)||(7774194-7774352)
chr4 (191-292)||(7770983-7771084)
chr4 (191-312)||(48735713-48735834)
chr4 (196-308)||(48902513-48902625)
chr4 (160-316)||(7877275-7877433)
chr4 (191-292)||(33134224-33134325)
chr4 (199-287)||(45372463-45372551)
chr4 (190-308)||(48890972-48891090)
chr4 (165-292)||(49044599-49044728)
chr4 (197-279)||(50668635-50668717)
chr4 (199-292)||(7789668-7789761)
chr4 (157-291)||(48156789-48156925)
chr4 (191-255)||(48148083-48148147)
chr4 (151-289)||(48862823-48862966)
chr4 (203-290)||(48898303-48898390)
chr4 (191-255)||(45366619-45366683)
chr4 (191-290)||(48870123-48870222)
chr4 (191-290)||(48885809-48885908)
chr4 (191-246)||(49048997-49049052)
chr4 (191-292)||(33133616-33133717)
chr4 (157-246)||(49041500-49041591)
[»] chr3 (4 HSPs)
chr3 (165-292)||(11006332-11006461)
chr3 (159-292)||(11024901-11025036)
chr3 (211-292)||(11015943-11016024)
chr3 (191-292)||(47452305-47452406)
[»] chr6 (3 HSPs)
chr6 (165-243)||(21980014-21980094)
chr6 (151-292)||(21015355-21015498)
chr6 (196-246)||(14193148-14193198)
[»] chr5 (4 HSPs)
chr5 (157-291)||(29687631-29687767)
chr5 (156-269)||(1812027-1812142)
chr5 (197-243)||(178647-178693)
chr5 (197-246)||(42562735-42562784)
[»] chr1 (1 HSPs)
chr1 (190-246)||(24322087-24322143)
[»] scaffold0508 (1 HSPs)
scaffold0508 (157-243)||(11890-11978)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Complemental strand, 48883644 - 48883228
Alignment:
Q  12 atcatcatcagactggggaatcaaaaagttattaaggtcgagtgaagcataatcattgttaaacaatgcttcaagatctaccgattgaatttcaggaggt 111  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48883644 atcatcatcagaccggggaatcaaaaagttattaaggtcgagtgaagcataatcattgttaagcaatgcttcaagatctaccgattgaatttcaggaggt 48883545  T
Q  112 ttatgtaatgatatggacacaattcgaccagcgtgtgcggcggctgtaagttgaaaatgggattttgcaaagttggtatgagagaagagaaaaccaaggc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48883544 ttatgtaatgatatggacacaattcgaccagcgtgtgcggcggctgtaagttgaaaatgggattttgcgaagttggtatgagagaagagaaaaccaaggc 48883445  T
Q  212 ttacaaacaca---tttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagataccgtagtgtcttcttct 308  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  48883444 ttacaaacacattttttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagataccgtagtg---tcttct 48883348  T
Q  309 tcttctccatgatccagcaccttcttcactctgattcgagtaacccttattatttttacaagttgtgactgatgcgaataaaacgcatttttgacctaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48883347 tcttctccatgatccagcaccttcttcactctgattcgagtaacccttattatttttacaagttgtgactgatgcgaataaaacgcatttttgacctaat 48883248  T
Q  409 tctttttacttgtccgaata 428  Q
    ||||||||||||||||||||    
T  48883247 tctttttacttgtccgaata 48883228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 570 - 670
Target Start/End: Complemental strand, 48883136 - 48883035
Alignment:
Q  570 aaactttacaacatgcttgattagtgcgatagttgttaactt-gattagtgtgataattgagaattatgtgggccgttttctattttgtggtgggtacta 668  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48883136 aaactttacaacatgcttgattagtgcgatagttgttaactttgattagtgtgataattaagaattatgtgggccgttttctattttgtggtgggtacta 48883037  T
Q  669 tt 670  Q
    ||    
T  48883036 tt 48883035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 460 - 555
Target Start/End: Complemental strand, 48883218 - 48883121
Alignment:
Q  460 ttaaatagtgtgagaattacccgtcaaactttacaacatgannnnnnnnng--aagaatttacaacttgatttcttttgtacaaactttacaacatgc 555  Q
    |||||||||||||||||||||||||||||||||||||||||         |  |||||||||||||||||||||||||||||||||||||||||||||    
T  48883218 ttaaatagtgtgagaattacccgtcaaactttacaacatgatttttttttgtgaagaatttacaacttgatttcttttgtacaaactttacaacatgc 48883121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 12199987 - 12199898
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 280  Q
    |||| |||||||||||| | |||||||||||||||||||| |||||||||||||||  | ||||||| ||  ||||||||||||||||||    
T  12199987 gagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 12199898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 12444415 - 12444326
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 280  Q
    |||| |||||||||||| | |||||||||||||||||||| |||||||||||||||  | ||||||| ||  ||||||||||||||||||    
T  12444415 gagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 12444326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 15348542 - 15348453
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 280  Q
    |||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||  |||||||| | | ||||||||  |||||||||    
T  15348542 gagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctctctagaatttgaactattaattca 15348453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 12194981 - 12194892
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 280  Q
    |||| |||||| ||||| | ||||||||  |||||||||| |||||||||||||||  | ||||||| ||  ||||||||||||||||||    
T  12194981 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 12194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 12439409 - 12439320
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 280  Q
    |||| |||||| ||||| | ||||||||  |||||||||| |||||||||||||||  | ||||||| ||  ||||||||||||||||||    
T  12439409 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 12439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 7238118 - 7238219
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| |||||||||||||| ||||||||||||||||||||  | ||||||||||||  | ||||||| || |||||| ||||||| |||| |||||||||    
T  7238118 gagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcagat 7238217  T
Q  291 ac 292  Q
    ||    
T  7238218 ac 7238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 151 - 319
Target Start/End: Complemental strand, 7904754 - 7904587
Alignment:
Q  151 gcggctgtaagttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacat 248  Q
    ||||| || ||||||||||| || ||||||||||  | || |||||  |||||||||||   ||||||||||||||||||||||| |||||||||||||     
T  7904754 gcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacag 7904655  T
Q  249 gtaacctcaccaaaatttgaatgattaattcaagaggcagataccgtagtgtcttcttcttcttctccatg 319  Q
    | |||| || ||| |||||||| || |||||| |||| ||||||   |  |||||||| ||||||||||||    
T  7904654 gcaaccacatcaagatttgaataatcaattcacgaggaagatac---aacgtcttctttttcttctccatg 7904587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 48170987 - 48171087
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||   |||||||| || ||||||||  || |||||||||| |||||    
T  48170987 gagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattcaagagccagat 48171086  T
Q  291 a 291  Q
    |    
T  48171087 a 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 160 - 316
Target Start/End: Original strand, 7774194 - 7774352
Alignment:
Q  160 agttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctca 257  Q
    ||||||||||| || |||||||| | || || |||||  |||||||||||  |||||||||||||||||||| | | ||||||||||||  | | || ||    
T  7774194 agttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgca 7774293  T
Q  258 ccaaaatttgaatgattaattcaagaggcagataccgtagtgtcttcttcttcttctcc 316  Q
     ||| |||||||| || |||||| |||| |||||| | |||||||||| ||||||||||    
T  7774294 tcaagatttgaataatcaattcatgaggaagatacggcagtgtcttctgcttcttctcc 7774352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 7771084 - 7770983
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| |||||||||||||| ||||||||| |||||||||| || ||||||||||||  | ||||||| || |||||| || |||| |||| |||||||||    
T  7771084 gagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgaggcagat 7770985  T
Q  291 ac 292  Q
    ||    
T  7770984 ac 7770983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 48735713 - 48735834
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||  |||||||||  | ||||||||  || || ||| ||||||||     
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgaggcagaa 48735812  T
Q  291 accgtagtgtcttcttcttctt 312  Q
    || | ||||  |||||||||||    
T  48735813 acggcagtggattcttcttctt 48735834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 48902625 - 48902513
Alignment:
Q  196 aagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagataccgt 295  Q
    |||||||||||||| ||||||||||||||||||||| |  |||||||| ||  | |||| |  ||||||||| ||||| |||||| |||| |||||| |     
T  48902625 aagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtagatacggc 48902526  T
Q  296 agtgtcttcttct 308  Q
    |||||||||||||    
T  48902525 agtgtcttcttct 48902513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 316
Target Start/End: Complemental strand, 7877433 - 7877275
Alignment:
Q  160 agttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctca 257  Q
    ||||||||||| || |||||||| |||| || |||||  |||||||||||  |||||||||  ||||||||||||| ||||||||||||  | ||||  |    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaa 7877334  T
Q  258 ccaaaatttgaatgattaattcaagaggcagataccgtagtgtcttcttcttcttctcc 316  Q
     ||  ||||| || || |||||| |||| |||||| |  ||||||||||||||||||||    
T  7877333 tcaggatttggataatcaattcatgaggaagatacggccgtgtcttcttcttcttctcc 7877275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 33134224 - 33134325
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| ||||||||| |||||||||||||| ||||||||||| | ||||||||||||  |||| |||| || |||  | ||||| |||||| |||||||||    
T  33134224 gagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagat 33134323  T
Q  291 ac 292  Q
    ||    
T  33134324 ac 33134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 45372463 - 45372551
Alignment:
Q  199 agaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggca 287  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||  | ||||| |  | ||||||||| || |||||| ||||||    
T  45372463 agaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaatttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 48891090 - 48890972
Alignment:
Q  190 tgagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcaga 289  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||   |||||||| || |||||  || || || ||  |||| |||    
T  48891090 tgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctcaacataatttcgataatcaactcgtgaggaaga 48890991  T
Q  290 taccgtagtgtcttcttct 308  Q
    | | |||||||||||||||    
T  48890990 tgcagtagtgtcttcttct 48890972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 49044599 - 49044728
Alignment:
Q  165 aaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaa 262  Q
    |||||| || |||||||||| ||| |||||||  |||||||||||   |||||||||||| |||||||||||||||||| ||||  | ||||||| || |    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcaga 49044698  T
Q  263 atttgaatgattaattcaagaggcagatac 292  Q
    ||  | ||||| || ||| |||||||||||    
T  49044699 ataaggatgatcaagtcatgaggcagatac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 50668717 - 50668635
Alignment:
Q  197 agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattc 279  Q
    |||||||||||||  |||||||| || |||||||||| |||| | |||||  | ||||||||||||||||||||||| |||||    
T  50668717 agagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattc 50668635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 7789761 - 7789668
Alignment:
Q  199 agaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagatac 292  Q
    ||||||||||| ||||||||| |||||||||| || ||||||||||||  | ||||||| || |||||| || || | |||| |||||||||||    
T  7789761 agaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatac 7789668  T

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Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 291
Target Start/End: Original strand, 48156789 - 48156925
Alignment:
Q  157 gtaagttgaaaatgggattttgcaaagttggtat--gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacc 254  Q
    |||| ||||||||| || |||||||| |  ||||  |||| |||||||||||||| ||||||||| || |||||||||| ||||||||||||  ||||||    
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  255 tcaccaaaatttgaatgattaattcaagaggcagata 291  Q
      |  |  |||||||| || |||||||| ||||||||    
T  48156889 ataaaaggatttgaattatcaattcaagtggcagata 48156925  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 48148083 - 48148147
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacct 255  Q
    |||| |||||||||||||| |||||| |||||||||||||| | ||||||||||||  |||||||    
T  48148083 gagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacct 48148147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 289
Target Start/End: Complemental strand, 48862966 - 48862823
Alignment:
Q  151 gcggctgtaagttgaaaatgggattttgcaaagttggtat-----gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttca 245  Q
    ||||| |||||||||||||| || ||||||||||  | ||     |||| |||||||||||||| ||| ||||| ||||||||||| | |||||||||||    
T  48862966 gcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttca 48862867  T
Q  246 catgtaacctcaccaaaatttgaatgattaattcaagaggcaga 289  Q
    |  ||||||| | ||  ||| | ||||| |||||| ||||||||    
T  48862866 ccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 48898390 - 48898303
Alignment:
Q  203 aaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    ||||||| |||||||||||| |||||||||  ||||||||||||| |||  |||| || |||||||||||  |||||| |||| ||||    
T  48898390 aaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagat 48898303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 45366619 - 45366683
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacct 255  Q
    |||| |||||||||||||  ||||||||| || |||||||||| ||||||||||||  |||||||    
T  45366619 gagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 48870222 - 48870123
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| |||| ||||||||| ||||||||| ||||||||||| | |||||| |||||  ||| ||||| || ||||||||  || |||||| || ||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 48870123  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 48885908 - 48885809
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| |||| ||||||||| ||||||||| ||||||||||| | |||||| |||||  ||| ||||| || ||||||||  || |||||| || ||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 48885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 49048997 - 49049052
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcac 246  Q
    |||| ||||||||||||   |||||||||||| |||||||||||||||||| ||||    
T  49048997 gagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49049052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 33133717 - 33133616
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| ||||||||||||| |||||||||   |||||||||| | |||||||||||   ||||||| | || |||  | ||||| |||||| |||||||||    
T  33133717 gagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaaccttagcagaataaggatgatcaattcatgaggcagat 33133618  T
Q  291 ac 292  Q
    ||    
T  33133617 ac 33133616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  157 gtaagttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcac 246  Q
    ||||||| |||||| || |||||||| | || || |||||  ||||||||||||| ||| ||||| ||||||||||  | ||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 11006332 - 11006461
Alignment:
Q  165 aaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaa 262  Q
    |||||| |||||||||||||  | || |||||  ||||  ||||| | |||||||||||| |||||||||| ||| ||||||||  | ||||||| |||     
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  263 atttgaatgattaattcaagaggcagatac 292  Q
    ||||| ||||| |||||| |||||||||||    
T  11006432 atttgtatgatcaattcatgaggcagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 11024901 - 11025036
Alignment:
Q  159 aagttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctc 256  Q
    ||||| |||||| ||||||||||||||   || |||||  ||||  ||||| | ||||||||| |||||||||||||  |||||||||||  ||||||||    
T  11024901 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 11025000  T
Q  257 accaaaatttgaatgattaattcaagaggcagatac 292  Q
    | ||  ||||| ||||| |||||| |||||| ||||    
T  11025001 aacatgatttgtatgatcaattcatgaggcaaatac 11025036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 11015943 - 11016024
Alignment:
Q  211 cttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagatac 292  Q
    ||||||||| |||||||||||||  |||||||||||  ||||||||| ||  ||||| || || |||||| |||||||||||    
T  11015943 cttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatac 11016024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 47452305 - 47452406
Alignment:
Q  191 gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagat 290  Q
    |||| |||||||||||| | |||| |||  || ||||| |||| ||||||||||||  | ||||||||||| || || || || ||||||||||| ||||    
T  47452305 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattcaagaggtagat 47452404  T
Q  291 ac 292  Q
    ||    
T  47452405 ac 47452406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 21980014 - 21980094
Alignment:
Q  165 aaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagactt 243  Q
    |||||| || || |||||||||| ||||||||  ||||||||||||| |||||||||||| ||||||||| | ||||||||    
T  21980014 aaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactt 21980094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 21015498 - 21015355
Alignment:
Q  151 gcggctgtaagttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacat 248  Q
    ||||| |||| || |||||| ||  ||||||||| ||| |||||||  ||||||||| |   |||||||||||| |||||||||| ||||||| | ||      
T  21015498 gcggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccg 21015399  T
Q  249 gtaacctcaccaaaatttgaatgattaattcaagaggcagatac 292  Q
    ||||||||| ||||||| | ||||| |||||  |||||||||||    
T  21015398 gtaacctcaacaaaattaggatgatcaattcttgaggcagatac 21015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 14193148 - 14193198
Alignment:
Q  196 aagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcac 246  Q
    |||||||| ||||  |||||||||||||||||||| ||| |||||||||||    
T  14193148 aagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcac 14193198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 29687767 - 29687631
Alignment:
Q  157 gtaagttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaacc 254  Q
    |||||||||||||| || ||||||||||  |  ||||| |  ||||||||||||| |||||||||||| ||||| |||| ||||||||||||  |||||     
T  29687767 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaact 29687668  T
Q  255 tcaccaaaatttgaatgattaattcaagaggcagata 291  Q
    | |  |  ||||||||||| |||||||  ||||||||    
T  29687667 ttagaaggatttgaatgatcaattcaatgggcagata 29687631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 1812142 - 1812027
Alignment:
Q  156 tgtaagttgaaaatgggattttgcaaagttggtat--gagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcacatgtaac 253  Q
    |||||||||||||||  | |||||||||| || ||  |||| ||||||||||||   ||||||||| |||||| ||||||  ||| |||||||  |||||    
T  1812142 tgtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T
Q  254 ctcaccaaaatttgaa 269  Q
    |||| |||||||||||    
T  1812042 ctcaacaaaatttgaa 1812027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 178693 - 178647
Alignment:
Q  197 agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagactt 243  Q
    ||||| ||||||| ||||||||||||||||||||| | |||||||||    
T  178693 agagataaccaagacttacaaacacatttgaaacgaataagagactt 178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 42562735 - 42562784
Alignment:
Q  197 agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcac 246  Q
    ||||||||||||| ||||||||| ||||||||||| | |||||| |||||    
T  42562735 agagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcac 42562784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 24322143 - 24322087
Alignment:
Q  190 tgagagaagagaaaaccaaggcttacaaacacatttgaaacgtaaaagagacttcac 246  Q
    ||||| |||||||||||||| ||||||||| ||||||||||| | ||||||||||||    
T  24322143 tgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcac 24322087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 11978 - 11890
Alignment:
Q  157 gtaagttgaaaatgggattttgcaaagttggtatgagaga--agagaaaaccaaggcttacaaacacatttgaaacgtaaaagagactt 243  Q
    |||||||||||||| || ||||||||||   ||| |||||  ||||||||||| | |||||||||  |||||||||| | |||||||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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