View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_low_20 (Length: 292)
Name: NF13495_low_20
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 19809991 - 19810252
Alignment:
| Q |
18 |
ttctcaacccaaaagaagacagagttcatagcgttcgagagaatgtaaggctgcaaggatttccagattgttataaactttgcagcactatcaaacagag |
117 |
Q |
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| T |
19809991 |
ttctcgacccaaaagaaggcagagttcatagcctccgagagaatgtaaggctacaaggatttccagattgttataaactttgcagccctatcaaacagag |
19810090 |
T |
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| Q |
118 |
gtacatgcaagttggaaatgtggttgctgttcctacagcccttgaccttggatacacattaggattagcctattcaaggactctttgacgacaagccgtt |
217 |
Q |
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||||||| |||||||||||| |||| ||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19810091 |
gtacatgtaagttggaaatgcggttactgttccaatggcccttgacctcggacacacattaggattagcctattcaaggactctttgacgacaagtcgtt |
19810190 |
T |
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| Q |
218 |
gacgactctcctgtttaagtagccatgctgtctagcccatcctttagctgtagttgatgatg |
279 |
Q |
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| T |
19810191 |
gacgactctcctgtttaagtagccatgctgtctagcccgtcctttagctgtagttgatgatg |
19810252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 9389377 - 9389215
Alignment:
| Q |
116 |
aggtacatgcaagttggaaatgtggttgctgttcctacagcccttgaccttggatacacattaggattagcctattcaaggactctttgacgacaagccg |
215 |
Q |
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| T |
9389377 |
aggtacatgcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttag-caattctaggactctctgatgacagtcct |
9389279 |
T |
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| Q |
216 |
ttgacgactctcctgtttaagtagccatgctgtctagcccatcctttagctgtagttgatgatg |
279 |
Q |
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| T |
9389278 |
ttgacaactctcccctttaagtacccaagttgtctggcccgttctttagatgtagttgatgatg |
9389215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 9389965 - 9389878
Alignment:
| Q |
33 |
aagacagagttcatagcgttcgagagaatgtaaggctgcaaggatttccagattgttataaactttgcagcactatcaaacagaggta |
120 |
Q |
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|||||||||||| ||| |||||||||||| |||||| |||||||||||||| || ||||| ||||| || || ||||||||||||| |
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| T |
9389965 |
aagacagagttcttagtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacagaggta |
9389878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 31939024 - 31938862
Alignment:
| Q |
116 |
aggtacatgcaagttggaaatgtggttgctgttcctacagcccttgaccttggatacacattaggattagcctattcaaggactctttgacgacaagccg |
215 |
Q |
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| T |
31939024 |
aggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttagca-attctaggactctctgatgacagtcct |
31938926 |
T |
|
| Q |
216 |
ttgacgactctcctgtttaagtagccatgctgtctagcccatcctttagctgtagttgatgatg |
279 |
Q |
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||||| | ||||| |||||||| ||| | |||||||||||| |||||| |||||||||||||| |
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| T |
31938925 |
ttgacaattctcccctttaagtacccaagttgtctagcccattctttagatgtagttgatgatg |
31938862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 13535653 - 13535500
Alignment:
| Q |
125 |
caagttggaaatgtggttgctgttcctacagcccttgaccttggatacacattaggattagcctattcaaggactctttgacgacaagccgttgacgact |
224 |
Q |
| |
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||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| || | |||||| |||||| | ||| |||||||| ||||| ||| |
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| T |
13535653 |
caagttggaaatgcggtcgctgttccggtagcccttgcccttggatacacattagg-tttggctattctaggactttctgatgacaagcctttgacaact |
13535555 |
T |
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| Q |
225 |
ctcctgtttaagtagccatgctgtctagcccatcctttagctgtagttgatgatg |
279 |
Q |
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|||| |||||||| ||| | ||||| |||| | |||||| | ||||||||||| |
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| T |
13535554 |
ctcccatttaagtacccaagttgtcttgccccttctttagatacagttgatgatg |
13535500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 31939592 - 31939505
Alignment:
| Q |
33 |
aagacagagttcatagcgttcgagagaatgtaaggctgcaaggatttccagattgttataaactttgcagcactatcaaacagaggta |
120 |
Q |
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|||||||||||| ||| | |||||||||| |||||| |||||||||||||| || ||||| ||||| || || ||||||||||||| |
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| T |
31939592 |
aagacagagttcttagtatacgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacagaggta |
31939505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 5639284 - 5639122
Alignment:
| Q |
116 |
aggtacatgcaagttggaaatgtggttgctgttcctacagcccttgaccttggatacacattaggattagcctattcaaggactctttgacgacaagccg |
215 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||| | |||| ||| ||||||||||| || ||||| ||||||||| || || ||||| || |
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| T |
5639284 |
aggtacatacaagttggaaatgcggttgctgttcctgtgggtcttgccctcggatacacattgggtttagcac-ttcaaggacgctctggggacaatcct |
5639186 |
T |
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| Q |
216 |
ttgacgactctcctgtttaagtagccatgctgtctagcccatcctttagctgtagttgatgatg |
279 |
Q |
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||||| ||||||| |||||||| ||| | ||||| |||| ||||||||||||||||||||||| |
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| T |
5639185 |
ttgacaactctcccctttaagtatccaagttgtcttgcccgtcctttagctgtagttgatgatg |
5639122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 5639658 - 5639592
Alignment:
| Q |
33 |
aagacagagttcatagcgttcgagagaatgtaaggctgcaaggatttccagattgttataaactttg |
99 |
Q |
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|||||||||| | || | |||||||||||| |||||| || |||||||| ||||| ||||||||||| |
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| T |
5639658 |
aagacagagtacttaccattcgagagaatgcaaggcttcagggatttcctgattgctataaactttg |
5639592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 1337779 - 1337692
Alignment:
| Q |
33 |
aagacagagttcatagcgttcgagagaatgtaaggctgcaaggatttccagattgttataaactttgcagcactatcaaacagaggta |
120 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||| |||||||||||||| || ||||| ||||| || || ||||||||||||| |
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| T |
1337779 |
aagacagagttcttagcattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacagaggta |
1337692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 1337193 - 1337031
Alignment:
| Q |
116 |
aggtacatgcaagttggaaatgtggttgctgttcctacagcccttgaccttggatacacattaggattagcctattcaaggactctttgacgacaagccg |
215 |
Q |
| |
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|||||||||||||||||||| | |||||||||||| ||||||| |||||||||||||||||| || | | |||| ||||| || || ||| || |
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| T |
1337193 |
aggtacatgcaagttggaaacgcagttgctgttcctgttgcccttgcccttggatacacattagg-tttggcaattctaggacactccgatgacggtcct |
1337095 |
T |
|
| Q |
216 |
ttgacgactctcctgtttaagtagccatgctgtctagcccatcctttagctgtagttgatgatg |
279 |
Q |
| |
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||||| ||||||| |||||||| || | |||||||||| |||||||| ||||||| |||||| |
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|
| T |
1337094 |
ttgacaactctcccctttaagtaccctagttgtctagcccgtcctttagatgtagttaatgatg |
1337031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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