View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_low_27 (Length: 223)
Name: NF13495_low_27
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 45306182 - 45306033
Alignment:
| Q |
60 |
atataatactgtatgtatgtattttattgagaaagaagatac-ttatatggtattatcggatcgtagaggtgaaaaaagaaagaagtattcgagttgaac |
158 |
Q |
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| T |
45306182 |
atataatactgtatgtatgtattttattgagaaagaagatacattatatggtattatcagatcgtagaggtgaaaaaagaa-gaagtattcgacttgaac |
45306084 |
T |
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| Q |
159 |
cgtacatgcatggagattggacagcaaaatagacaaagaaaagggtgaaag |
209 |
Q |
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| T |
45306083 |
cgtacatgcaaggagattggacagcaaaatagacaaagaaaagggtgaaag |
45306033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 45306256 - 45306221
Alignment:
| Q |
29 |
aatatatattatttaattattttctttgttcatata |
64 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45306256 |
aatatatattatttaattattttctttgttcatata |
45306221 |
T |
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