View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13495_low_3 (Length: 679)
Name: NF13495_low_3
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 438 - 658
Target Start/End: Original strand, 47022082 - 47022296
Alignment:
| Q |
438 |
ctaagaaagataaagttttggatattgattgattgattgagtaggaaaaaatgagtttggccactttgagtcgtgaaagttgacgtacgcatgcatgtca |
537 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47022082 |
ctaaaaaagataaagttttggatatagattgattgattgagtaggaaaaaatgagtttggccactttgagtcgtgaaagttgacgcacgcatgcatgtca |
47022181 |
T |
|
| Q |
538 |
tattgttttctctgggtcttcccgtggcaagctacagtaattattagtacgaaatcaacccaataatggctatgcctatatatatggtagttgtccagtc |
637 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47022182 |
tattgttttctctgggtcttcccgtggcaagctacagtaattattagtacgaaatcaacccaataatgg------ctatatatatggtagttgtccagtc |
47022275 |
T |
|
| Q |
638 |
tcactgtatcatggatcgatt |
658 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47022276 |
tcactgtatcatggatcgatt |
47022296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 307 - 441
Target Start/End: Original strand, 47021062 - 47021197
Alignment:
| Q |
307 |
aatgtatttgatataaaaatt-agacgaaaataccatttcccatcgtttaagagttccttctacaaacctaaagattaaacaacatcacaattttaagta |
405 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47021062 |
aatgtatttgatataaaaatttagacgaaaataccatttcccatcgtttaagagttccttctacaaacctaaagattaaacaacatcacaattttaagta |
47021161 |
T |
|
| Q |
406 |
aaatagctatttacaaaacgaacgagaggttgctaa |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47021162 |
aaatagctatttacaaaacgaacgagaggttactaa |
47021197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 47020769 - 47020919
Alignment:
| Q |
15 |
tatgctcctttcaagtaaaggtaaaatgcatggttgttgttgttacaaatattttaagatacttgataagaagtttaatgaaaaaacnnnnnnnnnnaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
47020769 |
tatgctcctttcaagtaaaggtaaaatgcatggttgttgttgttacaaatattttaagatacttgataaaaagtttaatgaaaaaac--ttttttttaaa |
47020866 |
T |
|
| Q |
115 |
aattgtgtattgattgcattaaaactttaaaaattgacttttgtttcattaaa |
167 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47020867 |
aattgtgtattgattgcattaaaattttaaaaattgacttttgtttcattaaa |
47020919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 38139697 - 38139754
Alignment:
| Q |
113 |
aaaattgtgtattgattgcattaaaactttaaaaattgacttttgtttcattaaattc |
170 |
Q |
| |
|
||||||||| ||| ||| |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38139697 |
aaaattgtgcatttattacattgaaactttgaaaattgacttttgtttcattaaattc |
38139754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 42791029 - 42790971
Alignment:
| Q |
112 |
aaaaattgtgtattgattgcattaaaactttaaaaattgacttttgtttcattaaattc |
170 |
Q |
| |
|
|||||||||||||| |||| ||| |||| || |||||||||||||||||||| |||||| |
|
|
| T |
42791029 |
aaaaattgtgtatttattgtattgaaacatttaaaattgacttttgtttcatcaaattc |
42790971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 17120196 - 17120245
Alignment:
| Q |
114 |
aaattgtgtattgattgcattaaaactttaaaaattgacttttgtttcat |
163 |
Q |
| |
|
|||||||| ||||||| |||| |||| ||||||||||||||||| ||||| |
|
|
| T |
17120196 |
aaattgtgcattgattacattgaaaccttaaaaattgacttttgcttcat |
17120245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 3684446 - 3684413
Alignment:
| Q |
130 |
gcattaaaactttaaaaattgacttttgtttcat |
163 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
3684446 |
gcattaaaactttaaaaattgacttttatttcat |
3684413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 37228358 - 37228394
Alignment:
| Q |
131 |
cattaaaactttaaaaattgacttttgtttcattaaa |
167 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
37228358 |
cattgaaactttaaaaattgacttttgcttcattaaa |
37228394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University