View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13495_low_5 (Length: 544)
Name: NF13495_low_5
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13495_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Complemental strand, 34658737 - 34658251
Alignment:
| Q |
13 |
atcatcaccggggaagagagcacagaaccaaatgcaccatcaaacttttggaaattagccactgtccatagagttgaggagttaaaatccatcatcagaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658737 |
atcatcaccggggaagagagcacagaaccaaatgcaccatcaaacttttggaaattagccactgtccatagagttgaggagttaaaatccatcatcagaa |
34658638 |
T |
|
| Q |
113 |
tccttccaatttcagcatcaggaattttacttatagctgcgtcagcacaccttcctagtttcgtcatcgaacaagctcgaacaatggaccgtcacctctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658637 |
tccttccaatttcagcatcaggaattttacttatagctgcctcagcacaccttcctagtttcgtcatcgaacaagctcgaacaatggaccgtcacctctc |
34658538 |
T |
|
| Q |
213 |
tcccacatttcaaatttcaccagccaacatgtcagttttcagtgttgtaaccatgatggcaggagtaattctttatgaacgcgtattcgtcccaatcgtc |
312 |
Q |
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| T |
34658537 |
tcacacatttcaaatttcaccagccaacatgtcagttttcagtgttgtaaccatgatggcaggagtaattctttatgaacgcgtattcatcccaatcgtc |
34658438 |
T |
|
| Q |
313 |
cgtaaattcacaaataatccggttggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658437 |
cgtaaattcacaaataatccggttggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttg |
34658338 |
T |
|
| Q |
413 |
aaatcaaaagaaaagaagttgctgctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtac |
499 |
Q |
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| T |
34658337 |
aaatcaaaagaaaagaagttgctgctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtac |
34658251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 53 - 499
Target Start/End: Complemental strand, 34665370 - 34664924
Alignment:
| Q |
53 |
caaacttttggaaattagccactgtccatagagttgaggagttaaaatccatcatcagaatccttccaatttcagcatcaggaattttacttatagctgc |
152 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||| |||||||||| | | | ||||| |||||||||| |||||||||||| |||| ||| |||| |
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| T |
34665370 |
caaacttatggaacttagccactgtccatagagttgaagagttaaaatgcctggttagaatgcttccaatttgggcatcaggaattctactcataactgc |
34665271 |
T |
|
| Q |
153 |
gtcagcacaccttcctagtttcgtcatcgaacaagctcgaacaatggaccgtcacctctctcccacatttcaaatttcaccagccaacatgtcagttttc |
252 |
Q |
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||| || | | |||||| || || | ||||||||| |||||||| ||||||||||||| |||||| |||||||||| |||| ||| || ||||| |
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| T |
34665270 |
atcatcatctcaacatagttttgtgattgtacaagctcgtacaatggatcgtcacctctctcacacattcgaaatttcaccggccagtatggcaattttc |
34665171 |
T |
|
| Q |
253 |
agtgttgtaaccatgatggcaggagtaattctttatgaacgcgtattcgtcccaatcgtccgtaaattcacaaataatccggttggaatcacgtgcatac |
352 |
Q |
| |
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|| || ||||||||||| |||| || ||||| || |||||| ||||||| ||| || |||||| ||||||||| ||||| | ||||||||| || | | |
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| T |
34665170 |
agcgtgctaaccatgatgacaggtgttattctatacgaacgcttattcgttccattcatccgtagattcacaaagaatcctgctggaatcacatgtttgc |
34665071 |
T |
|
| Q |
353 |
aaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgctgctaagtataacttatt |
452 |
Q |
| |
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||||||||||||| || ||| | || |||||||||||||| || | |||||| || ||||||||||||||| |||||||| | || || ||||||| |
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| T |
34665070 |
aaagaatgggaataggctttgtgattaacattatagccactatagtttcagcattggtggaaatcaaaagaaaaaaagttgcttccaaataccacttatt |
34664971 |
T |
|
| Q |
453 |
ggatgatccaaaagcaattattccaataagtgtattttggttggtac |
499 |
Q |
| |
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||| ||||||||||||||| || |||||||| ||||||||||||| |
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| T |
34664970 |
agatagtccaaaagcaattatccctataagtgtgttttggttggtac |
34664924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 41 - 499
Target Start/End: Complemental strand, 34645682 - 34645224
Alignment:
| Q |
41 |
caaatgcaccatcaaacttttggaaattagccactgtccatagagttgaggagttaaaatccatcatcagaatccttccaatttcagcatcaggaatttt |
140 |
Q |
| |
|
||||||||||| ||||| ||||||| |||| ||||||||||||||||||||| | ||| | ||||||||||| |||||||||| || ||||||||||| |
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|
| T |
34645682 |
caaatgcaccaccaaacctttggaatttagtcactgtccatagagttgaggaactgaaagctatcatcagaatgcttccaatttgggcttcaggaatttt |
34645583 |
T |
|
| Q |
141 |
acttatagctgcgtcagcacaccttcctagtttcgtcatcgaacaagctcgaacaatggaccgtcacctctctcccacatttcaaatttcaccagccaac |
240 |
Q |
| |
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|| ||| | ||| |||| | |||||| ||||| |||||||||| | ||||||||||||||| ||| |||| |||||| |||||||||| |
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| T |
34645582 |
gctcataatgtcttcatcacatttaggtagttttgtcattcaacaagctcgttcgatggaccgtcacctcactcattcattccaaattgcaccagccaat |
34645483 |
T |
|
| Q |
241 |
atgtcagttttcagtgttgtaaccatgatggcaggagtaattctttatgaacgcgtattcgtcccaatcgtccgtaaattcacaaataatccggttggaa |
340 |
Q |
| |
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|||||| |||| |||| ||||||||||| |||||| || || ||||||||| | ||||| ||| ||| ||||| ||||||||| ||||| | ||||| |
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| T |
34645482 |
atgtcaatttttggtgtcctaaccatgatgataggagttatgctatatgaacgctttttcgttccattcgcccgtagattcacaaagaatcctgctggaa |
34645383 |
T |
|
| Q |
341 |
tcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgctgctaa |
440 |
Q |
| |
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|||| || |||||||||||||| | || ||| | | ||||||||||| || || | ||||||| ||| |||| ||||||||| ||||||||| || |
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| T |
34645382 |
tcacatgtttacaaagaatgggagtagggtttgtggttaacattatagctactatagtttcagcactagtggaaacgaaaagaaaaacagttgctgcaaa |
34645283 |
T |
|
| Q |
441 |
gtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtac |
499 |
Q |
| |
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|| ||||||||||||||||||||||||||| || || | |||||||||||||| |||| |
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|
| T |
34645282 |
gtttaacttattggatgatccaaaagcaataatcccttttagtgtattttggttagtac |
34645224 |
T |
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