View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13495_low_6 (Length: 442)

Name: NF13495_low_6
Description: NF13495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13495_low_6
NF13495_low_6
[»] chr7 (6 HSPs)
chr7 (1-418)||(44115034-44115451)
chr7 (8-366)||(26001659-26002017)
chr7 (32-105)||(14231474-14231547)
chr7 (32-92)||(1264212-1264272)
chr7 (32-136)||(21712915-21713019)
chr7 (32-136)||(26907218-26907322)
[»] chr3 (5 HSPs)
chr3 (1-366)||(21037538-21037903)
chr3 (1-221)||(38894890-38895111)
chr3 (29-132)||(36155022-36155125)
chr3 (32-92)||(17688950-17689010)
chr3 (32-92)||(31687155-31687215)
[»] chr1 (2 HSPs)
chr1 (2-89)||(19252430-19252517)
chr1 (32-136)||(25226214-25226318)
[»] chr5 (1 HSPs)
chr5 (32-136)||(30443346-30443450)
[»] chr8 (1 HSPs)
chr8 (32-105)||(8163401-8163474)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 44115451 - 44115034
Alignment:
Q  1 cctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatcc 100  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44115451 cctattggcaacaatactactgggacaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatcc 44115352  T
Q  101 acaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactctgcaattgacg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44115351 acaatcacattcttaggcgtcaaaattgctctatctctgaaaaattatagatcattaatattatgcaaaatagaagggtaaattcactctacaattgacg 44115252  T
Q  201 caacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatcaccaatacacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  44115251 caacatgatcacctgaactacgaataagcaaatcgtcggggatacgtgcattaatttcatcatcacatgtatccccaacaacaccatcaccaatacacaa 44115152  T
Q  301 aacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcatgttcggtttcaatcagatcattgtgcaaaacctt 400  Q
    |||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44115151 aacccattaaccaaattttcctaattcatcgacatcattacttgaacagccatgtaaaagtctcatgttcggtttcaatcagatcattgtgcaaaacctt 44115052  T
Q  401 gaaacgatcaatgagatc 418  Q
    |||||||||||| |||||    
T  44115051 gaaacgatcaatcagatc 44115034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 26002017 - 26001659
Alignment:
Q  8 gcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatca 107  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || || |||||||    
T  26002017 gcaacaatactactggggcaaggtgaatcacaactcaaatatgtcctttcttcaccaggtatcaaagacataacataattgttaatttcgtcgacaatca 26001918  T
Q  108 cattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactctgcaattgacgcaacatg 207  Q
     |||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||| |||||||||||||||||||| |||||| |||| || ||||||||    
T  26001917 aattcttaggcgtcaaaatagctctatctctaaaaaactctggatcattcatattttgcaaaatagaagggtaaatgcactctacaatagatgcaacatg 26001818  T
Q  208 atcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatcaccaatacacaaaacccat 307  Q
    ||||||||||||||  |||||||  |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| | ||| ||||||    
T  26001817 atcacctgaactacagataagcaggtcgtcggggatatgtacattaattccatcatcacatacatctccaacaacaccatcaccaatgcccaatacccat 26001718  T
Q  308 taaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat 366  Q
    |  ||||||||||||||||||| |||||||  | || ||||||| || |||||||||||    
T  26001717 tctccaaattttcttaattcatcgacatcagcagttgaacaaccgtgcaaaagtctcat 26001659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 14231547 - 14231474
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaat 105  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| |||||    
T  14231547 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaacctcatcaacaat 14231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 1264272 - 1264212
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 92  Q
    |||||||||||||||||| |||||||||| || || || | |||||||||||| |||||||    
T  1264272 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacataacatagttattaa 1264212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 21713019 - 21712915
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 131  Q
    |||||||||||||||||| || ||||||||||| | || | ||||| |  ||||| |||||||||||| ||| | ||| | ||||| ||||||||  |||    
T  21713019 gaatcacaactcaaatatgtcttttcttcaccaagaatgagagacaaattataatcattaatctcatcaacagtgacaattttaggtgtcaaaataactc 21712920  T
Q  132 tatct 136  Q
    |||||    
T  21712919 tatct 21712915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 26907218 - 26907322
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 131  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| | |||   ||| ||||| ||||| ||||||     
T  26907218 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaacctcatcaaaaattgtatttttaggagtcaatattgctt 26907317  T
Q  132 tatct 136  Q
    |||||    
T  26907318 tatct 26907322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 21037538 - 21037903
Alignment:
Q  1 cctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatcc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| || |      
T  21037538 cctattagcaacagtactactggggcaaggtgaatcacaactcaaatatgtcctttcttcaccgggtatcaaagacataacataattgttaatttcgttg 21037637  T
Q  101 acaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactctgcaattgacg 200  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| || |    
T  21037638 acaatcaaattcttaggcgtcaaaatagctctatctctaaaaaactctagatcattcatattatgcaaaatagaagggtaaatgcactctacaatagatg 21037737  T
Q  201 caacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatcaccaatacacaa 300  Q
    |||||||||||||||||||||| |||||||  |||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||    
T  21037738 caacatgatcacctgaactacggataagcaggtcgtcggggatatgtacattaattccatcatcacatacatctccaacaaccccatcaccaatacccaa 21037837  T
Q  301 aacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat 366  Q
     |||||||  ||||||||||| ||||||| |||||||  |||| ||||||| || ||| |||||||    
T  21037838 tacccattctccaaattttctcaattcatcgacatcagcacttgaacaaccgtgcaaatgtctcat 21037903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38894890 - 38895111
Alignment:
Q  1 cctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatcc 100  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||| || ||     
T  38894890 cctattagcaacaatactaatggggcaaggtgaatcacaactcaaatatgtcctctcttcaccgggtatcaaagacataacataattgttaatttcgtcg 38894989  T
Q  101 acaatcacattcttaggcgtcaaaattgctctatctct-gaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactctgcaattgac 199  Q
    ||||||| |||||||||||||||||| |||||||||||  ||||| |||  |||||| |||||||||||||||||||||||||| |||||| |||| ||     
T  38894990 acaatcaaattcttaggcgtcaaaatagctctatctctaaaaaaactctgaatcattcatattatgcaaaatagaagggtaaatgcactctacaatagat 38895089  T
Q  200 gcaacatgatcacctgaactac 221  Q
    ||||||||||||| ||||||||    
T  38895090 gcaacatgatcacttgaactac 38895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 36155125 - 36155022
Alignment:
Q  29 ggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattg 128  Q
    |||||||||||||||| ||||||| ||||||||||| | | ||||||||  | ||||| |||||| || || ||||| ||||| || || ||||| || |    
T  36155125 ggtgaatcacaactcagatatatcttttcttcaccatggaccaaagacaacatataatcattaatttcctcaacaatgacatttttgggtgtcaatatgg 36155026  T
Q  129 ctct 132  Q
    ||||    
T  36155025 ctct 36155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 17689010 - 17688950
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 92  Q
    |||||||||||||||||| |||||||||| ||||  || | ||||| |||||| |||||||    
T  17689010 gaatcacaactcaaatatgtcctttcttcgccagaaatgagagacagaacatagttattaa 17688950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 31687215 - 31687155
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 92  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| |||||||    
T  31687215 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaa 31687155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19252430 - 19252517
Alignment:
Q  2 ctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 89  Q
    ||||| |||||||| || || ||||||| || ||||||||||||||| | | ||||||| |||||||||| |||||||||||||||||    
T  19252430 ctatttgcaacagtgctgctcgggcaagatgtatcacaactcaaatacaccttttcttcgccaggtatcatagacataacataattat 19252517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 25226318 - 25226214
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 131  Q
    |||||| ||||||||||| ||||||||||||| || || | ||||| |||||| ||||||| |||||| | |||   ||| ||||| ||||| ||||||     
T  25226318 gaatcataactcaaatatgtcctttcttcaccgggaatgagagacagaacatagttattaacctcatcaaaaattgtatttttaggagtcaatattgctt 25226219  T
Q  132 tatct 136  Q
    |||||    
T  25226218 tatct 25226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 30443346 - 30443450
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 131  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| |||||   ||| ||||| ||||| ||||||     
T  30443346 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacaaaacatagttattaacctcatcaacaattgtatttttaggagtcaatattgctt 30443445  T
Q  132 tatct 136  Q
    |||||    
T  30443446 tatct 30443450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 8163474 - 8163401
Alignment:
Q  32 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaat 105  Q
    |||||||||||||||||| |||||||||| || |  || | ||||| |||||| ||||||| |||||| |||||    
T  8163474 gaatcacaactcaaatatgtcctttcttcgccggaaatgagagacagaacatagttattaacctcatcaacaat 8163401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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