View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13496_high_2 (Length: 424)

Name: NF13496_high_2
Description: NF13496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13496_high_2
NF13496_high_2
[»] chr4 (3 HSPs)
chr4 (69-233)||(52305434-52305598)
chr4 (301-388)||(52305669-52305756)
chr4 (17-51)||(52305370-52305404)
[»] chr6 (1 HSPs)
chr6 (357-412)||(32260155-32260210)
[»] chr1 (2 HSPs)
chr1 (357-412)||(49569891-49569946)
chr1 (314-366)||(19534715-19534767)
[»] chr8 (1 HSPs)
chr8 (357-412)||(9045016-9045071)
[»] chr3 (1 HSPs)
chr3 (314-366)||(36863944-36863996)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 52305434 - 52305598
Alignment:
Q  69 cagaaacgagacaagattgagaggtgggagagttcaaattcaattggaaatcaatatggagaggtgcttgatctgactttaattttgtgaatcggccatt 168  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52305434 cagaaacgagacaagatggagaggtgggagagttcaaattcaattggaaatcaatatggagaggtgcttgatctcactttaattttgtgaatcggccatt 52305533  T
Q  169 ccaaatggattttgtgaatcagcctttacaattttgtgttgacgaaatggtgaaatcaatattat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52305534 ccaaatggattttgtgaatcagcctttacaattttgtgttgacgaaatggtgaaatcaatattat 52305598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 52305669 - 52305756
Alignment:
Q  301 gtgtagattacagtacttgaccttttttaaagagcaatttaatcttagacgttggtttagatccaagggttgagatttaatcctctca 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  52305669 gtgtagattacagtacttgaccttttttaaagagcaatttaatctcaggcgttggtttagatccaagggttgagatttaaccctctca 52305756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 52305370 - 52305404
Alignment:
Q  17 attccaatctacccaacaagaattgaatgaattat 51  Q
    |||||||||||||||||||||||||||||||||||    
T  52305370 attccaatctacccaacaagaattgaatgaattat 52305404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 32260210 - 32260155
Alignment:
Q  357 ttagatccaagggttgagatttaatcctctcattttaaagagtcctctcatttgat 412  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||    
T  32260210 ttagatctaaaggttgagatttaatcctctcattataaagagtcctctcatttgat 32260155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 49569891 - 49569946
Alignment:
Q  357 ttagatccaagggttgagatttaatcctctcattttaaagagtcctctcatttgat 412  Q
    ||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||    
T  49569891 ttagatctaaaggttgagatttaatcatctcattataaagagtcctctcatttgat 49569946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 19534715 - 19534767
Alignment:
Q  314 tacttgaccttttttaaagagcaatttaatcttagacgttggtttagatccaa 366  Q
    ||||||||| ||||||||||||| |||||| | || ||||| |||||||||||    
T  19534715 tacttgaccctttttaaagagcattttaatttgagccgttgatttagatccaa 19534767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 9045016 - 9045071
Alignment:
Q  357 ttagatccaagggttgagatttaatcctctcattttaaagagtcctctcatttgat 412  Q
    ||||||| |||||||||||||||| ||||||||  ||||||||| |||||||||||    
T  9045016 ttagatctaagggttgagatttaaccctctcataataaagagtcatctcatttgat 9045071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 36863996 - 36863944
Alignment:
Q  314 tacttgaccttttttaaagagcaatttaatcttagacgttggtttagatccaa 366  Q
    ||||||||| ||||||||||||| |||||||| || ||||| |||||||||||    
T  36863996 tacttgaccctttttaaagagcattttaatctgagccgttgatttagatccaa 36863944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University