View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13496_low_4 (Length: 278)
Name: NF13496_low_4
Description: NF13496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13496_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 2041366 - 2041124
Alignment:
| Q |
13 |
catcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
112 |
Q |
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| T |
2041366 |
catcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataa |
2041267 |
T |
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| Q |
113 |
tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2041266 |
tgtaaaataccttggagatgttagtcatgttgatcatgatatgcttgagagaatcttgcctcactgcacacttgaccagttgatgcatattgagaagtcc |
2041167 |
T |
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| Q |
213 |
actcaagggatggatttgagccctataacagatcaattgtgga |
255 |
Q |
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| T |
2041166 |
actcaagggatggatttgagccctataacagatcaattgtgga |
2041124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 1352291 - 1352536
Alignment:
| Q |
13 |
catcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
112 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352291 |
catcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
1352390 |
T |
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| Q |
113 |
tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
1352391 |
tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagaca |
1352490 |
T |
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| Q |
213 |
actcaagggatggatttgagccctataacagatcaattgtggaaaa |
258 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352491 |
aataaagggatggatttgagccctataacagatcaattgtggaaaa |
1352536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 45 - 258
Target Start/End: Original strand, 1357444 - 1357657
Alignment:
| Q |
45 |
cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
144 |
Q |
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| T |
1357444 |
cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
1357543 |
T |
|
| Q |
145 |
atcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
244 |
Q |
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| T |
1357544 |
atcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
1357643 |
T |
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| Q |
245 |
tcaattgtggaaaa |
258 |
Q |
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| |||||||||||| |
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| T |
1357644 |
taaattgtggaaaa |
1357657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 1364328 - 1364487
Alignment:
| Q |
99 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |
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| T |
1364328 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgc |
1364427 |
T |
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| Q |
199 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1364428 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaa |
1364487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 36717341 - 36717569
Alignment:
| Q |
30 |
ttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggag |
129 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717341 |
ttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggag |
36717440 |
T |
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| Q |
130 |
atgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggattt |
229 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||| |
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| T |
36717441 |
atgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggattt |
36717540 |
T |
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| Q |
230 |
gagccctataacagatcaattgtggaaaa |
258 |
Q |
| |
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|||||||||||| ||| |||||||||||| |
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| T |
36717541 |
gagccctataactgataaattgtggaaaa |
36717569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 24620630 - 24620443
Alignment:
| Q |
51 |
atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
150 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
24620531 |
T |
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| Q |
151 |
atatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctata |
239 |
Q |
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||||||||||| | |||||||||||||||||||||| | | ||||||||||||||| ||| | || ||||||||||||||| |||| |
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| T |
24620530 |
atatgcttgagtgaatcttgcctcactgcacacttgaccggaacatgcatattgagaaggccaatgaa-ggatggatttgagccatata |
24620443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 18180249 - 18180119
Alignment:
| Q |
79 |
tggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactg |
178 |
Q |
| |
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||||||||||||||||| | | |||||| |||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||||| | ||||||| ||||| |
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| T |
18180249 |
tggttgatctttgtgttcaaacagctatagataatttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttgccacactg |
18180150 |
T |
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| Q |
179 |
cacacttgatcagttgatgcatattgagaag |
209 |
Q |
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||||||||| ||||||| |||||| |||||| |
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| T |
18180149 |
cacacttgaccagttgacgcatatcgagaag |
18180119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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