View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13497_low_2 (Length: 477)
Name: NF13497_low_2
Description: NF13497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13497_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 229 - 468
Target Start/End: Original strand, 12690818 - 12691057
Alignment:
| Q |
229 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
328 |
Q |
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| T |
12690818 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
12690917 |
T |
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| Q |
329 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcgttcatctccaaaatcaacaatgtcgatgatgtccaataccacattgaatacg |
428 |
Q |
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| T |
12690918 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcgttcatctccaaaatcaacaatgtcgatgatgtccaataccacattgaatacg |
12691017 |
T |
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| Q |
429 |
ggaaactgagatgctatcagatgacaacggtgatgatgtc |
468 |
Q |
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| T |
12691018 |
ggaaactgagatgctatcagatgacaacggtgatgatgtc |
12691057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 12690670 - 12690833
Alignment:
| Q |
22 |
aaagagtccatgtagacaaacatcgtgacaattgttactttagacgatgatgtcataactggtgtgattgaaagagtcatatgtggtctaagagaggata |
121 |
Q |
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| T |
12690670 |
aaagagtccatgtagacaaacatcgtgacaactgttactttagacgatgatgtcataactggtgtgattgaaagagtcatatgtggtctaagagaggata |
12690769 |
T |
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| Q |
122 |
ttatagttggaatcattgttgctaaagagatttctaatatataatcattaaatcttaactttca |
185 |
Q |
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| T |
12690770 |
ttatagttggaatcattgttgctaaagagatttctaatatataatcattaaatcttaactttca |
12690833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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